miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22930 3' -52 NC_005137.2 + 33234 1.09 0.005879
Target:  5'- cAGUUUAACGCCGCCGACUCACCGUACc -3'
miRNA:   3'- -UCAAAUUGCGGCGGCUGAGUGGCAUG- -5'
22930 3' -52 NC_005137.2 + 65420 0.78 0.487071
Target:  5'- uGGUcaccguCGCCGCCgGGCUCGCUGUACc -3'
miRNA:   3'- -UCAaauu--GCGGCGG-CUGAGUGGCAUG- -5'
22930 3' -52 NC_005137.2 + 26507 0.75 0.643672
Target:  5'- cGUUUGACGCgGCCGAUgacuuaaaaguguggCGCgCGUACg -3'
miRNA:   3'- uCAAAUUGCGgCGGCUGa--------------GUG-GCAUG- -5'
22930 3' -52 NC_005137.2 + 64169 0.74 0.674343
Target:  5'- cGUUUAACGgCGCCGGa-CACaCGUACa -3'
miRNA:   3'- uCAAAUUGCgGCGGCUgaGUG-GCAUG- -5'
22930 3' -52 NC_005137.2 + 93630 0.73 0.746619
Target:  5'- uGUUUcggcaAACGgCGCUGGCgcgCACCGUGCc -3'
miRNA:   3'- uCAAA-----UUGCgGCGGCUGa--GUGGCAUG- -5'
22930 3' -52 NC_005137.2 + 31160 0.73 0.756595
Target:  5'- ---gUAGCGgCGCCGAC-CAgCGUGCg -3'
miRNA:   3'- ucaaAUUGCgGCGGCUGaGUgGCAUG- -5'
22930 3' -52 NC_005137.2 + 19268 0.7 0.856368
Target:  5'- ------cCGuuGCCGugUUGCCGUGCu -3'
miRNA:   3'- ucaaauuGCggCGGCugAGUGGCAUG- -5'
22930 3' -52 NC_005137.2 + 72535 0.7 0.856368
Target:  5'- uGUU--GCGCCGCCGAauugCGCgUGUACa -3'
miRNA:   3'- uCAAauUGCGGCGGCUga--GUG-GCAUG- -5'
22930 3' -52 NC_005137.2 + 33053 0.7 0.863513
Target:  5'- gAGUUUugucacCGCCGCCGGCuaccgcgUCGUCGUACg -3'
miRNA:   3'- -UCAAAuu----GCGGCGGCUG-------AGUGGCAUG- -5'
22930 3' -52 NC_005137.2 + 27458 0.7 0.87947
Target:  5'- ----aAACGCCGCCG-C-CACCGUuCa -3'
miRNA:   3'- ucaaaUUGCGGCGGCuGaGUGGCAuG- -5'
22930 3' -52 NC_005137.2 + 26202 0.7 0.87947
Target:  5'- gGGUUUGGuaaagacacUGCaCGCCGACUgggcCACCGUAa -3'
miRNA:   3'- -UCAAAUU---------GCG-GCGGCUGA----GUGGCAUg -5'
22930 3' -52 NC_005137.2 + 85410 0.7 0.87947
Target:  5'- gGGUU--ACGCCGCUGACgacagcgaCGCCGauUACa -3'
miRNA:   3'- -UCAAauUGCGGCGGCUGa-------GUGGC--AUG- -5'
22930 3' -52 NC_005137.2 + 61178 0.7 0.893699
Target:  5'- cAGUU---UGCCGUCGuCUCGCCGcACa -3'
miRNA:   3'- -UCAAauuGCGGCGGCuGAGUGGCaUG- -5'
22930 3' -52 NC_005137.2 + 111690 0.69 0.913189
Target:  5'- gGGUcaAGCGCuUGCCagcaGCUCGCUGUACa -3'
miRNA:   3'- -UCAaaUUGCG-GCGGc---UGAGUGGCAUG- -5'
22930 3' -52 NC_005137.2 + 95591 0.69 0.913189
Target:  5'- cGUUU--UGCCGCCcGCgCACUGUGCg -3'
miRNA:   3'- uCAAAuuGCGGCGGcUGaGUGGCAUG- -5'
22930 3' -52 NC_005137.2 + 110604 0.69 0.924915
Target:  5'- cGUguacGCGCCgGCCGcggugugcacGCUCACCGUcGCg -3'
miRNA:   3'- uCAaau-UGCGG-CGGC----------UGAGUGGCA-UG- -5'
22930 3' -52 NC_005137.2 + 108719 0.69 0.924915
Target:  5'- -----cGCGCCGCCGA-UCAC-GUACa -3'
miRNA:   3'- ucaaauUGCGGCGGCUgAGUGgCAUG- -5'
22930 3' -52 NC_005137.2 + 50174 0.68 0.930392
Target:  5'- ----aAACGUCGaguCCGugUCGCCGUAg -3'
miRNA:   3'- ucaaaUUGCGGC---GGCugAGUGGCAUg -5'
22930 3' -52 NC_005137.2 + 20523 0.68 0.935613
Target:  5'- uGUUacACGCaCGCCGACUgGuuGUGg -3'
miRNA:   3'- uCAAauUGCG-GCGGCUGAgUggCAUg -5'
22930 3' -52 NC_005137.2 + 32349 0.68 0.940579
Target:  5'- ----aAACGCCGCCGug-CGCCG-ACc -3'
miRNA:   3'- ucaaaUUGCGGCGGCugaGUGGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.