miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22930 5' -52.9 NC_005137.2 + 102747 0.66 0.965138
Target:  5'- aGUGUCaaaaAUCAAggcacgUGCGGUGcGUGUuGGg -3'
miRNA:   3'- -UACAGg---UAGUUa-----ACGCCGC-CGCAuCC- -5'
22930 5' -52.9 NC_005137.2 + 76773 0.66 0.963072
Target:  5'- aAUGUCCAU-GAUUGUgaauugaaucuguucGGCGGCGUc-- -3'
miRNA:   3'- -UACAGGUAgUUAACG---------------CCGCCGCAucc -5'
22930 5' -52.9 NC_005137.2 + 33766 0.66 0.961649
Target:  5'- cAUGgCCAUUGugcGCGGCGGCGUu-- -3'
miRNA:   3'- -UACaGGUAGUuaaCGCCGCCGCAucc -5'
22930 5' -52.9 NC_005137.2 + 63783 0.66 0.957924
Target:  5'- -cGaCCGUCGcc-GCGGCGGCGUu-- -3'
miRNA:   3'- uaCaGGUAGUuaaCGCCGCCGCAucc -5'
22930 5' -52.9 NC_005137.2 + 24400 0.66 0.953958
Target:  5'- ---aCCGUCAuUUGCGGCGaGCacaGUAGa -3'
miRNA:   3'- uacaGGUAGUuAACGCCGC-CG---CAUCc -5'
22930 5' -52.9 NC_005137.2 + 107112 0.67 0.932512
Target:  5'- cUG-CCAUCGAagGCauaacaagcgacgaaGGCGGCGgcGGg -3'
miRNA:   3'- uACaGGUAGUUaaCG---------------CCGCCGCauCC- -5'
22930 5' -52.9 NC_005137.2 + 125019 0.67 0.924915
Target:  5'- -cGgCgAUCGGUUGCGGCguGGCGcAGGc -3'
miRNA:   3'- uaCaGgUAGUUAACGCCG--CCGCaUCC- -5'
22930 5' -52.9 NC_005137.2 + 27298 0.68 0.913189
Target:  5'- uUGcUCCAccugaaCGGUgGCGGCGGCGUuuuGGg -3'
miRNA:   3'- uAC-AGGUa-----GUUAaCGCCGCCGCAu--CC- -5'
22930 5' -52.9 NC_005137.2 + 130428 0.7 0.822555
Target:  5'- -cGUCUaacaacaaauuGUCAAgcgGCGGUGGCGgcGGc -3'
miRNA:   3'- uaCAGG-----------UAGUUaa-CGCCGCCGCauCC- -5'
22930 5' -52.9 NC_005137.2 + 122051 0.7 0.813615
Target:  5'- aAUGUCCAcaAAUUGCGGCGuGUccGGGu -3'
miRNA:   3'- -UACAGGUagUUAACGCCGC-CGcaUCC- -5'
22930 5' -52.9 NC_005137.2 + 108144 0.71 0.756595
Target:  5'- -gGU-CGUCGGgcgGCGGCGGCGUcGGu -3'
miRNA:   3'- uaCAgGUAGUUaa-CGCCGCCGCAuCC- -5'
22930 5' -52.9 NC_005137.2 + 33272 1.08 0.004947
Target:  5'- cAUGUCCAUCAAUUGCGGCGGCGUAGGu -3'
miRNA:   3'- -UACAGGUAGUUAACGCCGCCGCAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.