Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22931 | 3' | -45.1 | NC_005137.2 | + | 64652 | 0.78 | 0.904524 |
Target: 5'- cCCGuuuGUUGGCGGGCAAUgacccgGAcacGGCg -3' miRNA: 3'- -GGCu--UAACCGCCUGUUAaa----CUaa-CCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 63912 | 0.66 | 0.999991 |
Target: 5'- gCGAugcUUGGCGGACGGUUcgcacgcGGUg -3' miRNA: 3'- gGCUu--AACCGCCUGUUAAacuaa--CCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 23990 | 0.68 | 0.999915 |
Target: 5'- cCCG--UUGGCGG-CcAUUUGAcUUGGUu -3' miRNA: 3'- -GGCuuAACCGCCuGuUAAACU-AACCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 71599 | 0.69 | 0.999601 |
Target: 5'- gUGcAAUUGGCGGACGAguccgcGUUcGGCa -3' miRNA: 3'- gGC-UUAACCGCCUGUUaaac--UAA-CCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 9465 | 0.7 | 0.99903 |
Target: 5'- gCCGuaaUGGCGGACAAgagcgggUUGuUUGuGCu -3' miRNA: 3'- -GGCuuaACCGCCUGUUa------AACuAAC-CG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 50697 | 0.7 | 0.998545 |
Target: 5'- aUCGcGUUGGCGGGCAcgUcuuuaaaUGGCg -3' miRNA: 3'- -GGCuUAACCGCCUGUuaAacua---ACCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 46614 | 0.71 | 0.99787 |
Target: 5'- uUGggUUGGCGGgACAGUUuaccgccaUGGUggacagcGGCg -3' miRNA: 3'- gGCuuAACCGCC-UGUUAA--------ACUAa------CCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 27306 | 0.71 | 0.996377 |
Target: 5'- cCUGAAcggUGGCGGcgGCGuUUUGGgcagUGGCg -3' miRNA: 3'- -GGCUUa--ACCGCC--UGUuAAACUa---ACCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 34611 | 1.18 | 0.009788 |
Target: 5'- aCCGAAUUGGCGGACAAUUUGAUUGGCg -3' miRNA: 3'- -GGCUUAACCGCCUGUUAAACUAACCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 4687 | 0.66 | 0.999987 |
Target: 5'- aCGAggaucGUUGGaCGGuuucCAAUUUGGUgaauaGGCa -3' miRNA: 3'- gGCU-----UAACC-GCCu---GUUAAACUAa----CCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 100153 | 0.66 | 0.999987 |
Target: 5'- -gGAGUUGGUGG-CGG-UUGGUgcgugcgcugcUGGCg -3' miRNA: 3'- ggCUUAACCGCCuGUUaAACUA-----------ACCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 80610 | 0.66 | 0.999981 |
Target: 5'- aCGGuac-GCGGACAAg--GAUgUGGCg -3' miRNA: 3'- gGCUuaacCGCCUGUUaaaCUA-ACCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 57040 | 0.67 | 0.999952 |
Target: 5'- uCCGAGUUGGaGGGCcgc--GAUgaaGGCg -3' miRNA: 3'- -GGCUUAACCgCCUGuuaaaCUAa--CCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 73647 | 0.68 | 0.999754 |
Target: 5'- uUCGuucauGUUGaugcacuuuGCGGGCGGUUUGG-UGGCg -3' miRNA: 3'- -GGCu----UAAC---------CGCCUGUUAAACUaACCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 80783 | 0.69 | 0.999369 |
Target: 5'- -----gUGGCGGccACAGUgUUGAUUGGUu -3' miRNA: 3'- ggcuuaACCGCC--UGUUA-AACUAACCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 42677 | 0.72 | 0.994116 |
Target: 5'- gCCGAuucgGGCGGGCGAgc-GAUUaGCg -3' miRNA: 3'- -GGCUuaa-CCGCCUGUUaaaCUAAcCG- -5' |
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22931 | 3' | -45.1 | NC_005137.2 | + | 19700 | 0.73 | 0.986258 |
Target: 5'- aCGggUUGGCGGcggGCAcagaacgccuucGUUUGccUGGCg -3' miRNA: 3'- gGCuuAACCGCC---UGU------------UAAACuaACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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