miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22931 5' -57.9 NC_005137.2 + 107298 0.66 0.785154
Target:  5'- -gGUcGGCGuc-ACCCaACCCGCCGCc -3'
miRNA:   3'- caCGcUCGCuaaUGGGcUGGGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 13068 0.67 0.766518
Target:  5'- -cGCGuuuGCGAaacgcGCCCGaACuuGCCACc -3'
miRNA:   3'- caCGCu--CGCUaa---UGGGC-UGggCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 116276 0.67 0.757016
Target:  5'- gGUGCGAGUGGccGCCUGuauuuugUCCGCgCACa -3'
miRNA:   3'- -CACGCUCGCUaaUGGGCu------GGGCG-GUG- -5'
22931 5' -57.9 NC_005137.2 + 42664 0.67 0.727886
Target:  5'- -gGCGAGCGAUUAgCgCGcuauaCCGCCGg -3'
miRNA:   3'- caCGCUCGCUAAUgG-GCug---GGCGGUg -5'
22931 5' -57.9 NC_005137.2 + 84735 0.68 0.708037
Target:  5'- aUGa-AGCacgUGCCCGACCCGCC-Cg -3'
miRNA:   3'- cACgcUCGcuaAUGGGCUGGGCGGuG- -5'
22931 5' -57.9 NC_005137.2 + 45606 0.68 0.698013
Target:  5'- -cGCGuGCGcgUGCUgCGccGCCCGCUACu -3'
miRNA:   3'- caCGCuCGCuaAUGG-GC--UGGGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 95843 0.68 0.676791
Target:  5'- -aGCGGGCGAcggauugUUGCCCGuguuuaaucggcACaCCGCCGa -3'
miRNA:   3'- caCGCUCGCU-------AAUGGGC------------UG-GGCGGUg -5'
22931 5' -57.9 NC_005137.2 + 73778 0.69 0.646214
Target:  5'- -cGCGGGCGuagccucGUUcGCCaCGGCCUGCUGCa -3'
miRNA:   3'- caCGCUCGC-------UAA-UGG-GCUGGGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 20394 0.69 0.596152
Target:  5'- -aGCGAGCuGUUGCCCGACCUaGUa-- -3'
miRNA:   3'- caCGCUCGcUAAUGGGCUGGG-CGgug -5'
22931 5' -57.9 NC_005137.2 + 55201 0.7 0.535777
Target:  5'- -gGUGGGCGuuuccaaucguGUUAUuuGGCCUGCCACc -3'
miRNA:   3'- caCGCUCGC-----------UAAUGggCUGGGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 63797 0.7 0.535777
Target:  5'- -cGCGAcGCGA-UGCgCGACCguCGCCGCg -3'
miRNA:   3'- caCGCU-CGCUaAUGgGCUGG--GCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 108314 0.71 0.523939
Target:  5'- -gGCGGGCGcgcgcauaCCGACgCCGCCGCc -3'
miRNA:   3'- caCGCUCGCuaaug---GGCUG-GGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 125274 0.72 0.449812
Target:  5'- cGUuCGAGCG---GCgCGGCCCGCCGCu -3'
miRNA:   3'- -CAcGCUCGCuaaUGgGCUGGGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 16778 0.72 0.448899
Target:  5'- cUGCGGcuaaaacuuuuccGCGAUUAgUCGAgCCGCCGCg -3'
miRNA:   3'- cACGCU-------------CGCUAAUgGGCUgGGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 28052 0.77 0.239891
Target:  5'- uUGcCGGGCGAUgACCCGugGCgCCGCCACg -3'
miRNA:   3'- cAC-GCUCGCUAaUGGGC--UG-GGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 43964 0.78 0.192302
Target:  5'- -cGCGGGCGGcUGCUCGugCCGUCGCu -3'
miRNA:   3'- caCGCUCGCUaAUGGGCugGGCGGUG- -5'
22931 5' -57.9 NC_005137.2 + 34651 1.08 0.001889
Target:  5'- uGUGCGAGCGAUUACCCGACCCGCCACc -3'
miRNA:   3'- -CACGCUCGCUAAUGGGCUGGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.