Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22931 | 5' | -57.9 | NC_005137.2 | + | 107298 | 0.66 | 0.785154 |
Target: 5'- -gGUcGGCGuc-ACCCaACCCGCCGCc -3' miRNA: 3'- caCGcUCGCuaaUGGGcUGGGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 42664 | 0.67 | 0.727886 |
Target: 5'- -gGCGAGCGAUUAgCgCGcuauaCCGCCGg -3' miRNA: 3'- caCGCUCGCUAAUgG-GCug---GGCGGUg -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 116276 | 0.67 | 0.757016 |
Target: 5'- gGUGCGAGUGGccGCCUGuauuuugUCCGCgCACa -3' miRNA: 3'- -CACGCUCGCUaaUGGGCu------GGGCG-GUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 13068 | 0.67 | 0.766518 |
Target: 5'- -cGCGuuuGCGAaacgcGCCCGaACuuGCCACc -3' miRNA: 3'- caCGCu--CGCUaa---UGGGC-UGggCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 95843 | 0.68 | 0.676791 |
Target: 5'- -aGCGGGCGAcggauugUUGCCCGuguuuaaucggcACaCCGCCGa -3' miRNA: 3'- caCGCUCGCU-------AAUGGGC------------UG-GGCGGUg -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 45606 | 0.68 | 0.698013 |
Target: 5'- -cGCGuGCGcgUGCUgCGccGCCCGCUACu -3' miRNA: 3'- caCGCuCGCuaAUGG-GC--UGGGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 84735 | 0.68 | 0.708037 |
Target: 5'- aUGa-AGCacgUGCCCGACCCGCC-Cg -3' miRNA: 3'- cACgcUCGcuaAUGGGCUGGGCGGuG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 20394 | 0.69 | 0.596152 |
Target: 5'- -aGCGAGCuGUUGCCCGACCUaGUa-- -3' miRNA: 3'- caCGCUCGcUAAUGGGCUGGG-CGgug -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 73778 | 0.69 | 0.646214 |
Target: 5'- -cGCGGGCGuagccucGUUcGCCaCGGCCUGCUGCa -3' miRNA: 3'- caCGCUCGC-------UAA-UGG-GCUGGGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 55201 | 0.7 | 0.535777 |
Target: 5'- -gGUGGGCGuuuccaaucguGUUAUuuGGCCUGCCACc -3' miRNA: 3'- caCGCUCGC-----------UAAUGggCUGGGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 63797 | 0.7 | 0.535777 |
Target: 5'- -cGCGAcGCGA-UGCgCGACCguCGCCGCg -3' miRNA: 3'- caCGCU-CGCUaAUGgGCUGG--GCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 108314 | 0.71 | 0.523939 |
Target: 5'- -gGCGGGCGcgcgcauaCCGACgCCGCCGCc -3' miRNA: 3'- caCGCUCGCuaaug---GGCUG-GGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 125274 | 0.72 | 0.449812 |
Target: 5'- cGUuCGAGCG---GCgCGGCCCGCCGCu -3' miRNA: 3'- -CAcGCUCGCuaaUGgGCUGGGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 16778 | 0.72 | 0.448899 |
Target: 5'- cUGCGGcuaaaacuuuuccGCGAUUAgUCGAgCCGCCGCg -3' miRNA: 3'- cACGCU-------------CGCUAAUgGGCUgGGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 28052 | 0.77 | 0.239891 |
Target: 5'- uUGcCGGGCGAUgACCCGugGCgCCGCCACg -3' miRNA: 3'- cAC-GCUCGCUAaUGGGC--UG-GGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 43964 | 0.78 | 0.192302 |
Target: 5'- -cGCGGGCGGcUGCUCGugCCGUCGCu -3' miRNA: 3'- caCGCUCGCUaAUGGGCugGGCGGUG- -5' |
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22931 | 5' | -57.9 | NC_005137.2 | + | 34651 | 1.08 | 0.001889 |
Target: 5'- uGUGCGAGCGAUUACCCGACCCGCCACc -3' miRNA: 3'- -CACGCUCGCUAAUGGGCUGGGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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