Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22932 | 3' | -55.1 | NC_005137.2 | + | 112568 | 0.66 | 0.894613 |
Target: 5'- cGCCGUacuUGcACAAUGGCGCGccguGCGCGa -3' miRNA: 3'- -CGGCGac-ACcUGUUACUGCGC----UGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 112447 | 0.66 | 0.901182 |
Target: 5'- gGCCGUUGgacgcgGcGGCAGgaugGGCGaCGGCGCc -3' miRNA: 3'- -CGGCGACa-----C-CUGUUa---CUGC-GCUGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 46082 | 0.66 | 0.901182 |
Target: 5'- cGCCGCUauuuUGGACGc-GACGUGcaacACGCAc -3' miRNA: 3'- -CGGCGAc---ACCUGUuaCUGCGC----UGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 6 | 0.66 | 0.925044 |
Target: 5'- -aCGCg--GGGcCAGUGAacaGCGGCGCGu -3' miRNA: 3'- cgGCGacaCCU-GUUACUg--CGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 42343 | 0.66 | 0.919444 |
Target: 5'- cGUCGCgucccUGUcGGCg--GACGCGACGCu -3' miRNA: 3'- -CGGCG-----ACAcCUGuuaCUGCGCUGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 13906 | 0.66 | 0.919444 |
Target: 5'- uGCCGCUGa--AC-AUGACGCGcUGCAc -3' miRNA: 3'- -CGGCGACaccUGuUACUGCGCuGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 29703 | 0.66 | 0.9136 |
Target: 5'- gGCCgGUUGUGuACAGcuccggguuguUGuCGCGGCGCAc -3' miRNA: 3'- -CGG-CGACACcUGUU-----------ACuGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 96270 | 0.67 | 0.887808 |
Target: 5'- gGCCGUugcauUGUGGcCAAcucgGACGCG-UGCAu -3' miRNA: 3'- -CGGCG-----ACACCuGUUa---CUGCGCuGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 57203 | 0.67 | 0.873508 |
Target: 5'- uGCCGCacaaccaUGGACAAgauUGACGCcaaACGCGu -3' miRNA: 3'- -CGGCGac-----ACCUGUU---ACUGCGc--UGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 117578 | 0.67 | 0.866022 |
Target: 5'- cGCCGCcgGUGcGGC--UGACggGCGACGUg -3' miRNA: 3'- -CGGCGa-CAC-CUGuuACUG--CGCUGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 105558 | 0.67 | 0.866022 |
Target: 5'- uGCCGCgacuuUGUGGACAA--ACGCGuuguCGUc -3' miRNA: 3'- -CGGCG-----ACACCUGUUacUGCGCu---GCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 181 | 0.67 | 0.866022 |
Target: 5'- cUCGCUGUGGAUGuucAUGAUGgGGCaGCc -3' miRNA: 3'- cGGCGACACCUGU---UACUGCgCUG-CGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 101151 | 0.67 | 0.880772 |
Target: 5'- gGCCGCgGuUGGACAG----GCGugGCAg -3' miRNA: 3'- -CGGCGaC-ACCUGUUacugCGCugCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 72473 | 0.67 | 0.880772 |
Target: 5'- uUCGCguucGGACAGUGGCGCcGCGUu -3' miRNA: 3'- cGGCGaca-CCUGUUACUGCGcUGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 74862 | 0.67 | 0.878616 |
Target: 5'- uGCCGCUGgacguguugGGACAagccuuuuuAUccaaaguagagaacGugGUGACGCAg -3' miRNA: 3'- -CGGCGACa--------CCUGU---------UA--------------CugCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 96658 | 0.67 | 0.887115 |
Target: 5'- cGCCGCUagucauagcgcccGUGGACAc-GACGCGcacCGUg -3' miRNA: 3'- -CGGCGA-------------CACCUGUuaCUGCGCu--GCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 97393 | 0.67 | 0.85832 |
Target: 5'- uGCCGCgcaaauaaguuUGcagguUGGGCAcguacaccgGGCGCGGCGCAc -3' miRNA: 3'- -CGGCG-----------AC-----ACCUGUua-------CUGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 42194 | 0.67 | 0.85832 |
Target: 5'- cGCCGacagGGACGGcGACGCG-CGCu -3' miRNA: 3'- -CGGCgacaCCUGUUaCUGCGCuGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 61417 | 0.67 | 0.85832 |
Target: 5'- cGCCGCguucucaaacaUGUcgGGACGuuugccGUGuCGCGugGCAa -3' miRNA: 3'- -CGGCG-----------ACA--CCUGU------UACuGCGCugCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 56578 | 0.68 | 0.816801 |
Target: 5'- cGCCGUUaugGGACcc-GACGCGACGg- -3' miRNA: 3'- -CGGCGAca-CCUGuuaCUGCGCUGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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