miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22932 3' -55.1 NC_005137.2 + 35379 1.11 0.002308
Target:  5'- cGCCGCUGUGGACAAUGACGCGACGCAu -3'
miRNA:   3'- -CGGCGACACCUGUUACUGCGCUGCGU- -5'
22932 3' -55.1 NC_005137.2 + 29441 0.75 0.440767
Target:  5'- uCCGUUG-GGACGucccuUGACGCGACGUc -3'
miRNA:   3'- cGGCGACaCCUGUu----ACUGCGCUGCGu -5'
22932 3' -55.1 NC_005137.2 + 81971 0.74 0.497591
Target:  5'- aGCUGCUcgGUGGGCAcaucgauACGCGACGCGc -3'
miRNA:   3'- -CGGCGA--CACCUGUuac----UGCGCUGCGU- -5'
22932 3' -55.1 NC_005137.2 + 56680 0.73 0.547324
Target:  5'- cGgCGCUGUGGAC-GUGAcCG-GACGCGa -3'
miRNA:   3'- -CgGCGACACCUGuUACU-GCgCUGCGU- -5'
22932 3' -55.1 NC_005137.2 + 125159 0.71 0.660693
Target:  5'- cGCCGCUGac-ACGAUGGCGCGGUGUg -3'
miRNA:   3'- -CGGCGACaccUGUUACUGCGCUGCGu -5'
22932 3' -55.1 NC_005137.2 + 52787 0.7 0.711922
Target:  5'- uGCUGCgGUGGugGcUGAgGCGGCGg- -3'
miRNA:   3'- -CGGCGaCACCugUuACUgCGCUGCgu -5'
22932 3' -55.1 NC_005137.2 + 18741 0.7 0.748774
Target:  5'- -aCGCUGcGGGCAAUcucgcaauugaaacGGCGCGGuCGCAa -3'
miRNA:   3'- cgGCGACaCCUGUUA--------------CUGCGCU-GCGU- -5'
22932 3' -55.1 NC_005137.2 + 103913 0.69 0.761405
Target:  5'- gGCCGCUG-GGuguccaACAcgGAUuCGGCGCAg -3'
miRNA:   3'- -CGGCGACaCC------UGUuaCUGcGCUGCGU- -5'
22932 3' -55.1 NC_005137.2 + 100442 0.69 0.761405
Target:  5'- aCUGCauguggagauUGUGGGCGugaAUGcCGCGACGCGc -3'
miRNA:   3'- cGGCG----------ACACCUGU---UACuGCGCUGCGU- -5'
22932 3' -55.1 NC_005137.2 + 70124 0.69 0.770986
Target:  5'- cCCGCUGUGGuCGGUGuCGUGcaacuCGCu -3'
miRNA:   3'- cGGCGACACCuGUUACuGCGCu----GCGu -5'
22932 3' -55.1 NC_005137.2 + 87972 0.69 0.780441
Target:  5'- cGCCGUccGUGGGC---GACGCGugGUu -3'
miRNA:   3'- -CGGCGa-CACCUGuuaCUGCGCugCGu -5'
22932 3' -55.1 NC_005137.2 + 109533 0.69 0.780441
Target:  5'- gGCUGCaGUGuGACGGUGGCGaCGGgaGCAg -3'
miRNA:   3'- -CGGCGaCAC-CUGUUACUGC-GCUg-CGU- -5'
22932 3' -55.1 NC_005137.2 + 79498 0.69 0.789759
Target:  5'- uGCCGUcuacgacgGUGGACAugaccaccGUaGACGUGAUGCGc -3'
miRNA:   3'- -CGGCGa-------CACCUGU--------UA-CUGCGCUGCGU- -5'
22932 3' -55.1 NC_005137.2 + 17316 0.68 0.807947
Target:  5'- -gCGCUGUGcGACGu--GCGCGuCGCAg -3'
miRNA:   3'- cgGCGACAC-CUGUuacUGCGCuGCGU- -5'
22932 3' -55.1 NC_005137.2 + 56578 0.68 0.816801
Target:  5'- cGCCGUUaugGGACcc-GACGCGACGg- -3'
miRNA:   3'- -CGGCGAca-CCUGuuaCUGCGCUGCgu -5'
22932 3' -55.1 NC_005137.2 + 38948 0.68 0.825481
Target:  5'- aCCG-UGUGGGCAGcGAaGUGACGCGc -3'
miRNA:   3'- cGGCgACACCUGUUaCUgCGCUGCGU- -5'
22932 3' -55.1 NC_005137.2 + 41618 0.68 0.833981
Target:  5'- uCCGCUGcGGACA---GCGCGuGCGCc -3'
miRNA:   3'- cGGCGACaCCUGUuacUGCGC-UGCGu -5'
22932 3' -55.1 NC_005137.2 + 24510 0.68 0.850408
Target:  5'- --gGCgacgGUGGugAA--ACGCGACGCAa -3'
miRNA:   3'- cggCGa---CACCugUUacUGCGCUGCGU- -5'
22932 3' -55.1 NC_005137.2 + 61417 0.67 0.85832
Target:  5'- cGCCGCguucucaaacaUGUcgGGACGuuugccGUGuCGCGugGCAa -3'
miRNA:   3'- -CGGCG-----------ACA--CCUGU------UACuGCGCugCGU- -5'
22932 3' -55.1 NC_005137.2 + 42194 0.67 0.85832
Target:  5'- cGCCGacagGGACGGcGACGCG-CGCu -3'
miRNA:   3'- -CGGCgacaCCUGUUaCUGCGCuGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.