Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22932 | 3' | -55.1 | NC_005137.2 | + | 6 | 0.66 | 0.925044 |
Target: 5'- -aCGCg--GGGcCAGUGAacaGCGGCGCGu -3' miRNA: 3'- cgGCGacaCCU-GUUACUg--CGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 181 | 0.67 | 0.866022 |
Target: 5'- cUCGCUGUGGAUGuucAUGAUGgGGCaGCc -3' miRNA: 3'- cGGCGACACCUGU---UACUGCgCUG-CGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 13906 | 0.66 | 0.919444 |
Target: 5'- uGCCGCUGa--AC-AUGACGCGcUGCAc -3' miRNA: 3'- -CGGCGACaccUGuUACUGCGCuGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 17316 | 0.68 | 0.807947 |
Target: 5'- -gCGCUGUGcGACGu--GCGCGuCGCAg -3' miRNA: 3'- cgGCGACAC-CUGUuacUGCGCuGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 18741 | 0.7 | 0.748774 |
Target: 5'- -aCGCUGcGGGCAAUcucgcaauugaaacGGCGCGGuCGCAa -3' miRNA: 3'- cgGCGACaCCUGUUA--------------CUGCGCU-GCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 24510 | 0.68 | 0.850408 |
Target: 5'- --gGCgacgGUGGugAA--ACGCGACGCAa -3' miRNA: 3'- cggCGa---CACCugUUacUGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 29441 | 0.75 | 0.440767 |
Target: 5'- uCCGUUG-GGACGucccuUGACGCGACGUc -3' miRNA: 3'- cGGCGACaCCUGUu----ACUGCGCUGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 29703 | 0.66 | 0.9136 |
Target: 5'- gGCCgGUUGUGuACAGcuccggguuguUGuCGCGGCGCAc -3' miRNA: 3'- -CGG-CGACACcUGUU-----------ACuGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 35379 | 1.11 | 0.002308 |
Target: 5'- cGCCGCUGUGGACAAUGACGCGACGCAu -3' miRNA: 3'- -CGGCGACACCUGUUACUGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 38948 | 0.68 | 0.825481 |
Target: 5'- aCCG-UGUGGGCAGcGAaGUGACGCGc -3' miRNA: 3'- cGGCgACACCUGUUaCUgCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 41618 | 0.68 | 0.833981 |
Target: 5'- uCCGCUGcGGACA---GCGCGuGCGCc -3' miRNA: 3'- cGGCGACaCCUGUuacUGCGC-UGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 42194 | 0.67 | 0.85832 |
Target: 5'- cGCCGacagGGACGGcGACGCG-CGCu -3' miRNA: 3'- -CGGCgacaCCUGUUaCUGCGCuGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 42343 | 0.66 | 0.919444 |
Target: 5'- cGUCGCgucccUGUcGGCg--GACGCGACGCu -3' miRNA: 3'- -CGGCG-----ACAcCUGuuaCUGCGCUGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 46082 | 0.66 | 0.901182 |
Target: 5'- cGCCGCUauuuUGGACGc-GACGUGcaacACGCAc -3' miRNA: 3'- -CGGCGAc---ACCUGUuaCUGCGC----UGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 52787 | 0.7 | 0.711922 |
Target: 5'- uGCUGCgGUGGugGcUGAgGCGGCGg- -3' miRNA: 3'- -CGGCGaCACCugUuACUgCGCUGCgu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 56578 | 0.68 | 0.816801 |
Target: 5'- cGCCGUUaugGGACcc-GACGCGACGg- -3' miRNA: 3'- -CGGCGAca-CCUGuuaCUGCGCUGCgu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 56680 | 0.73 | 0.547324 |
Target: 5'- cGgCGCUGUGGAC-GUGAcCG-GACGCGa -3' miRNA: 3'- -CgGCGACACCUGuUACU-GCgCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 57203 | 0.67 | 0.873508 |
Target: 5'- uGCCGCacaaccaUGGACAAgauUGACGCcaaACGCGu -3' miRNA: 3'- -CGGCGac-----ACCUGUU---ACUGCGc--UGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 61417 | 0.67 | 0.85832 |
Target: 5'- cGCCGCguucucaaacaUGUcgGGACGuuugccGUGuCGCGugGCAa -3' miRNA: 3'- -CGGCG-----------ACA--CCUGU------UACuGCGCugCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 70124 | 0.69 | 0.770986 |
Target: 5'- cCCGCUGUGGuCGGUGuCGUGcaacuCGCu -3' miRNA: 3'- cGGCGACACCuGUUACuGCGCu----GCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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