Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22932 | 3' | -55.1 | NC_005137.2 | + | 100442 | 0.69 | 0.761405 |
Target: 5'- aCUGCauguggagauUGUGGGCGugaAUGcCGCGACGCGc -3' miRNA: 3'- cGGCG----------ACACCUGU---UACuGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 103913 | 0.69 | 0.761405 |
Target: 5'- gGCCGCUG-GGuguccaACAcgGAUuCGGCGCAg -3' miRNA: 3'- -CGGCGACaCC------UGUuaCUGcGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 18741 | 0.7 | 0.748774 |
Target: 5'- -aCGCUGcGGGCAAUcucgcaauugaaacGGCGCGGuCGCAa -3' miRNA: 3'- cgGCGACaCCUGUUA--------------CUGCGCU-GCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 52787 | 0.7 | 0.711922 |
Target: 5'- uGCUGCgGUGGugGcUGAgGCGGCGg- -3' miRNA: 3'- -CGGCGaCACCugUuACUgCGCUGCgu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 81971 | 0.74 | 0.497591 |
Target: 5'- aGCUGCUcgGUGGGCAcaucgauACGCGACGCGc -3' miRNA: 3'- -CGGCGA--CACCUGUuac----UGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 38948 | 0.68 | 0.825481 |
Target: 5'- aCCG-UGUGGGCAGcGAaGUGACGCGc -3' miRNA: 3'- cGGCgACACCUGUUaCUgCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 41618 | 0.68 | 0.833981 |
Target: 5'- uCCGCUGcGGACA---GCGCGuGCGCc -3' miRNA: 3'- cGGCGACaCCUGUuacUGCGC-UGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 24510 | 0.68 | 0.850408 |
Target: 5'- --gGCgacgGUGGugAA--ACGCGACGCAa -3' miRNA: 3'- cggCGa---CACCugUUacUGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 42343 | 0.66 | 0.919444 |
Target: 5'- cGUCGCgucccUGUcGGCg--GACGCGACGCu -3' miRNA: 3'- -CGGCG-----ACAcCUGuuaCUGCGCUGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 13906 | 0.66 | 0.919444 |
Target: 5'- uGCCGCUGa--AC-AUGACGCGcUGCAc -3' miRNA: 3'- -CGGCGACaccUGuUACUGCGCuGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 29703 | 0.66 | 0.9136 |
Target: 5'- gGCCgGUUGUGuACAGcuccggguuguUGuCGCGGCGCAc -3' miRNA: 3'- -CGG-CGACACcUGUU-----------ACuGCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 112568 | 0.66 | 0.894613 |
Target: 5'- cGCCGUacuUGcACAAUGGCGCGccguGCGCGa -3' miRNA: 3'- -CGGCGac-ACcUGUUACUGCGC----UGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 96658 | 0.67 | 0.887115 |
Target: 5'- cGCCGCUagucauagcgcccGUGGACAc-GACGCGcacCGUg -3' miRNA: 3'- -CGGCGA-------------CACCUGUuaCUGCGCu--GCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 101151 | 0.67 | 0.880772 |
Target: 5'- gGCCGCgGuUGGACAG----GCGugGCAg -3' miRNA: 3'- -CGGCGaC-ACCUGUUacugCGCugCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 72473 | 0.67 | 0.880772 |
Target: 5'- uUCGCguucGGACAGUGGCGCcGCGUu -3' miRNA: 3'- cGGCGaca-CCUGUUACUGCGcUGCGu -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 74862 | 0.67 | 0.878616 |
Target: 5'- uGCCGCUGgacguguugGGACAagccuuuuuAUccaaaguagagaacGugGUGACGCAg -3' miRNA: 3'- -CGGCGACa--------CCUGU---------UA--------------CugCGCUGCGU- -5' |
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22932 | 3' | -55.1 | NC_005137.2 | + | 29441 | 0.75 | 0.440767 |
Target: 5'- uCCGUUG-GGACGucccuUGACGCGACGUc -3' miRNA: 3'- cGGCGACaCCUGUu----ACUGCGCUGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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