miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22932 5' -49.4 NC_005137.2 + 38932 0.66 0.996283
Target:  5'- aGUGaCGCgCAUCAccAACgACAGCGUg -3'
miRNA:   3'- gCGC-GCGgGUAGUaaUUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 64529 0.66 0.996283
Target:  5'- uGUGCGCaCCGgcaaCGUUGAC--CAACGUg -3'
miRNA:   3'- gCGCGCG-GGUa---GUAAUUGauGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 100223 0.66 0.996283
Target:  5'- gCGCGCGCCgCGgcacaaagCAU--GCUG-AACGCg -3'
miRNA:   3'- -GCGCGCGG-GUa-------GUAauUGAUgUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 72681 0.66 0.996283
Target:  5'- --gGUGCCCG-CGUUAAUguuuUugGACGCg -3'
miRNA:   3'- gcgCGCGGGUaGUAAUUG----AugUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 112414 0.66 0.996283
Target:  5'- gGCGCG-CCAUUGUgcAAgUACGGCGUu -3'
miRNA:   3'- gCGCGCgGGUAGUAa-UUgAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 122616 0.66 0.996283
Target:  5'- aUGCGUGgCaCAUCGUU-ACUGCGcgugAUGCg -3'
miRNA:   3'- -GCGCGCgG-GUAGUAAuUGAUGU----UGCG- -5'
22932 5' -49.4 NC_005137.2 + 99248 0.66 0.9957
Target:  5'- gCGCGCGCCCcgUugccacgggcacaguUUAACggugACggUGCc -3'
miRNA:   3'- -GCGCGCGGGuaGu--------------AAUUGa---UGuuGCG- -5'
22932 5' -49.4 NC_005137.2 + 35839 0.66 0.995631
Target:  5'- cCGCGUGCCUAUUAcaAACUuuACcgUGCc -3'
miRNA:   3'- -GCGCGCGGGUAGUaaUUGA--UGuuGCG- -5'
22932 5' -49.4 NC_005137.2 + 9572 0.66 0.995631
Target:  5'- uGCGCaCCCG-CuUUGGCgGCGAUGCg -3'
miRNA:   3'- gCGCGcGGGUaGuAAUUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 27581 0.66 0.995631
Target:  5'- aGCGCGUgggCCAgcuGUUAcagcGCUGCAGCGg -3'
miRNA:   3'- gCGCGCG---GGUag-UAAU----UGAUGUUGCg -5'
22932 5' -49.4 NC_005137.2 + 96430 0.66 0.995631
Target:  5'- -aCGCGUCCga-GUUGGCcACAAUGCa -3'
miRNA:   3'- gcGCGCGGGuagUAAUUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 119812 0.66 0.995631
Target:  5'- aGCgGCGCCCAUUuugaauaaAUaAACgAUAACGCc -3'
miRNA:   3'- gCG-CGCGGGUAG--------UAaUUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 29039 0.66 0.995631
Target:  5'- gCGUGCGCgCGUUuagUAGCcAUGACGUa -3'
miRNA:   3'- -GCGCGCGgGUAGua-AUUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 21458 0.67 0.994888
Target:  5'- uGUGCGCCUGUCGgcAAUUGgAACa- -3'
miRNA:   3'- gCGCGCGGGUAGUaaUUGAUgUUGcg -5'
22932 5' -49.4 NC_005137.2 + 87839 0.67 0.994888
Target:  5'- uGCGCGUuuGUCAUUAug-ACGAC-Ca -3'
miRNA:   3'- gCGCGCGggUAGUAAUugaUGUUGcG- -5'
22932 5' -49.4 NC_005137.2 + 35497 0.67 0.994888
Target:  5'- gCGCGUGCCCAgCAcc-ACcACGucuACGCa -3'
miRNA:   3'- -GCGCGCGGGUaGUaauUGaUGU---UGCG- -5'
22932 5' -49.4 NC_005137.2 + 63787 0.67 0.994888
Target:  5'- uGCGCGaCCGUCGcc-GCgGCGGCGUu -3'
miRNA:   3'- gCGCGCgGGUAGUaauUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 93666 0.67 0.994809
Target:  5'- aCGCGUGCauuugcgCCGUCG---GCUACGACa- -3'
miRNA:   3'- -GCGCGCG-------GGUAGUaauUGAUGUUGcg -5'
22932 5' -49.4 NC_005137.2 + 86662 0.67 0.994046
Target:  5'- aGUuuaCGCCCAaCAgccGACUugAACGCa -3'
miRNA:   3'- gCGc--GCGGGUaGUaa-UUGAugUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 33260 0.67 0.994046
Target:  5'- cCGCGUGCugcucauguCCAUCAauuGCgGCGGCGUa -3'
miRNA:   3'- -GCGCGCG---------GGUAGUaauUGaUGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.