miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22932 5' -49.4 NC_005137.2 + 947 0.72 0.914671
Target:  5'- --aGCGCCCGUCAUcGGCgcaauaaGGCGCg -3'
miRNA:   3'- gcgCGCGGGUAGUAaUUGaug----UUGCG- -5'
22932 5' -49.4 NC_005137.2 + 1997 0.74 0.813815
Target:  5'- cCGCGUGCaCAgcUCGUgcacGCUGCGGCGCa -3'
miRNA:   3'- -GCGCGCGgGU--AGUAau--UGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 2225 0.69 0.972775
Target:  5'- -aCGCGCCCGugaUCGUUucaaaucacGACUACGAcCGUg -3'
miRNA:   3'- gcGCGCGGGU---AGUAA---------UUGAUGUU-GCG- -5'
22932 5' -49.4 NC_005137.2 + 3488 0.69 0.981342
Target:  5'- cCGCGCgGCCCGacaggucaaUCAcuUUGGCUACuaaaucgguuacuuGCGCg -3'
miRNA:   3'- -GCGCG-CGGGU---------AGU--AAUUGAUGu-------------UGCG- -5'
22932 5' -49.4 NC_005137.2 + 5069 0.74 0.813815
Target:  5'- gCGUGCGCCgCGaCAUUGAg-ACGGCGCg -3'
miRNA:   3'- -GCGCGCGG-GUaGUAAUUgaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 7341 0.74 0.840486
Target:  5'- -aCGCGCCgGUUcgaaAUgcGCUGCAACGCg -3'
miRNA:   3'- gcGCGCGGgUAG----UAauUGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 7595 0.69 0.980455
Target:  5'- aGCGUGCCUcgCG---AUUGCAAuCGCg -3'
miRNA:   3'- gCGCGCGGGuaGUaauUGAUGUU-GCG- -5'
22932 5' -49.4 NC_005137.2 + 7647 0.69 0.978101
Target:  5'- aGCGUGCCCAgauuaguaUCAaaUUGcACcgaagGCAACGCu -3'
miRNA:   3'- gCGCGCGGGU--------AGU--AAU-UGa----UGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 9514 0.66 0.996854
Target:  5'- cCGC-CGCUUGUCAcgUUGACgaACAGCGUg -3'
miRNA:   3'- -GCGcGCGGGUAGU--AAUUGa-UGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 9572 0.66 0.995631
Target:  5'- uGCGCaCCCG-CuUUGGCgGCGAUGCg -3'
miRNA:   3'- gCGCGcGGGUaGuAAUUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 12271 0.7 0.955492
Target:  5'- aCGCGCuuuaaacaCCGUCAccgUuuCUGCAGCGCa -3'
miRNA:   3'- -GCGCGcg------GGUAGUa--AuuGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 12763 0.71 0.946859
Target:  5'- cCGCGuUGCCgAUCG--AGCUACuGCGCc -3'
miRNA:   3'- -GCGC-GCGGgUAGUaaUUGAUGuUGCG- -5'
22932 5' -49.4 NC_005137.2 + 14044 0.69 0.975544
Target:  5'- uCGCGCGCCguUCAguuaUAAUUAUAAgGg -3'
miRNA:   3'- -GCGCGCGGguAGUa---AUUGAUGUUgCg -5'
22932 5' -49.4 NC_005137.2 + 14653 0.66 0.997349
Target:  5'- aGCGCGCacaaAUCGUUuaAGCUugAcguaaACGCc -3'
miRNA:   3'- gCGCGCGgg--UAGUAA--UUGAugU-----UGCG- -5'
22932 5' -49.4 NC_005137.2 + 15834 0.69 0.975277
Target:  5'- aCGUGCGUCCAUUGUUGACcuuguuuUACAA-GUa -3'
miRNA:   3'- -GCGCGCGGGUAGUAAUUG-------AUGUUgCG- -5'
22932 5' -49.4 NC_005137.2 + 17669 0.78 0.639777
Target:  5'- aGCGCGCCC-UCGUUAAC----GCGCa -3'
miRNA:   3'- gCGCGCGGGuAGUAAUUGauguUGCG- -5'
22932 5' -49.4 NC_005137.2 + 18243 0.79 0.585949
Target:  5'- uGCGCGUCguUCGU--ACUGCGGCGCc -3'
miRNA:   3'- gCGCGCGGguAGUAauUGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 18310 0.67 0.990833
Target:  5'- cCGCGCGggCAUCGc-GACUGCAcggACGCc -3'
miRNA:   3'- -GCGCGCggGUAGUaaUUGAUGU---UGCG- -5'
22932 5' -49.4 NC_005137.2 + 18947 0.67 0.991327
Target:  5'- uCGCGCGCagCCGacuuggcgucaauguUCAUgcGACUuCGACGCg -3'
miRNA:   3'- -GCGCGCG--GGU---------------AGUAa-UUGAuGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 19133 0.67 0.992028
Target:  5'- cCGUGCGCgacgaGUCAUUcgccAGCaACAACGCc -3'
miRNA:   3'- -GCGCGCGgg---UAGUAA----UUGaUGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.