miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22933 5' -55.8 NC_005137.2 + 118000 0.65 0.909605
Target:  5'- --aCGCGUcCGUGCugGugguugccccggugGCGGgAUCGg -3'
miRNA:   3'- caaGCGCGuGCACGugC--------------UGCCgUAGC- -5'
22933 5' -55.8 NC_005137.2 + 84588 0.66 0.905287
Target:  5'- -gUCGgGCACGUGCuucauACGGuCGUUGa -3'
miRNA:   3'- caAGCgCGUGCACGugc--UGCC-GUAGC- -5'
22933 5' -55.8 NC_005137.2 + 7175 0.66 0.905287
Target:  5'- -aUCGCGCGCGuUGCAgcgcauuuCGAacCGGCG-CGu -3'
miRNA:   3'- caAGCGCGUGC-ACGU--------GCU--GCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 110632 0.66 0.905287
Target:  5'- --cCGUGCACaaacGCGcCGACGGCGUUu -3'
miRNA:   3'- caaGCGCGUGca--CGU-GCUGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 1999 0.66 0.905287
Target:  5'- --gCGUGCAcagcuCGUGCACGcuGCGGCGc-- -3'
miRNA:   3'- caaGCGCGU-----GCACGUGC--UGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 39621 0.66 0.905287
Target:  5'- --gCGCaGCACaUGUACGAuCGGCGUUc -3'
miRNA:   3'- caaGCG-CGUGcACGUGCU-GCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 26840 0.66 0.898918
Target:  5'- cGUUCaGCGCcaucaaACGUucGCACGuGCGuGCGUCGu -3'
miRNA:   3'- -CAAG-CGCG------UGCA--CGUGC-UGC-CGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 50247 0.66 0.898918
Target:  5'- --aCGCGCAUuUGCGCGgccguggagGCGcGCGUCa -3'
miRNA:   3'- caaGCGCGUGcACGUGC---------UGC-CGUAGc -5'
22933 5' -55.8 NC_005137.2 + 61257 0.66 0.898918
Target:  5'- ---gGCGUugGUGCGCGuuuuuuacGCGGCGc-- -3'
miRNA:   3'- caagCGCGugCACGUGC--------UGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 100238 0.66 0.898918
Target:  5'- uUUCaauaaGCACGUGCGCGcgccGCGGCAc-- -3'
miRNA:   3'- cAAGcg---CGUGCACGUGC----UGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 103811 0.66 0.898918
Target:  5'- ----uUGCugGUGUGCGGCGGCggGUUGg -3'
miRNA:   3'- caagcGCGugCACGUGCUGCCG--UAGC- -5'
22933 5' -55.8 NC_005137.2 + 67696 0.66 0.892314
Target:  5'- --gCGCGCGuuUGUGC-CGccucGCGGCGUUGa -3'
miRNA:   3'- caaGCGCGU--GCACGuGC----UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 17301 0.66 0.892314
Target:  5'- -aUCGUauaauaguuGCGCGUGCugGugACGGCAa-- -3'
miRNA:   3'- caAGCG---------CGUGCACGugC--UGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 33720 0.66 0.892314
Target:  5'- aGUUUGCuaaCACGUugGCuacuGCGGCGGCGUUGu -3'
miRNA:   3'- -CAAGCGc--GUGCA--CG----UGCUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 115133 0.66 0.892314
Target:  5'- aUUCGggcgGCACGUGaC-CGGCGGCAcugUCGu -3'
miRNA:   3'- cAAGCg---CGUGCAC-GuGCUGCCGU---AGC- -5'
22933 5' -55.8 NC_005137.2 + 66171 0.66 0.885479
Target:  5'- --aCGCGCAuCG-GCugGgGCGGCAaCGa -3'
miRNA:   3'- caaGCGCGU-GCaCGugC-UGCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 95336 0.66 0.885479
Target:  5'- --cUGCGUGCGUaGUGC-ACGGCGUCa -3'
miRNA:   3'- caaGCGCGUGCA-CGUGcUGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 31854 0.66 0.883384
Target:  5'- --aCGUGCACacgucgGUGCgaccgcacaaccacGCGGCGGUGUCGu -3'
miRNA:   3'- caaGCGCGUG------CACG--------------UGCUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 5567 0.66 0.878418
Target:  5'- --aCGCGCucgcaaugggagACGUGUAUGgccguuuuuGCGGCAUUGg -3'
miRNA:   3'- caaGCGCG------------UGCACGUGC---------UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 43979 0.66 0.878418
Target:  5'- -aUCGCGUucgACGgGCGCGgGCGGCugcUCGu -3'
miRNA:   3'- caAGCGCG---UGCaCGUGC-UGCCGu--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.