miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22933 5' -55.8 NC_005137.2 + 36523 1.08 0.003174
Target:  5'- gGUUCGCGCACGUGCACGACGGCAUCGu -3'
miRNA:   3'- -CAAGCGCGUGCACGUGCUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 95749 0.79 0.244676
Target:  5'- -gUCGCGCACaGUGCGCGGgCGGCAaaacggcguuUCGg -3'
miRNA:   3'- caAGCGCGUG-CACGUGCU-GCCGU----------AGC- -5'
22933 5' -55.8 NC_005137.2 + 112405 0.78 0.281808
Target:  5'- -aUCGCGCACG-GCGCGccauugugcaaguACGGCGUUGg -3'
miRNA:   3'- caAGCGCGUGCaCGUGC-------------UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 110983 0.77 0.339087
Target:  5'- --gCGCGCACGacucuUGCGCGucggcggGCGGCGUCGa -3'
miRNA:   3'- caaGCGCGUGC-----ACGUGC-------UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 36672 0.75 0.422761
Target:  5'- -gUCGUGCACGUGCGCGAacccaccgugaaCGGaaaaAUCGu -3'
miRNA:   3'- caAGCGCGUGCACGUGCU------------GCCg---UAGC- -5'
22933 5' -55.8 NC_005137.2 + 16596 0.74 0.449899
Target:  5'- --gCGCGCAUugaUGCGCGGCGGC-UCGa -3'
miRNA:   3'- caaGCGCGUGc--ACGUGCUGCCGuAGC- -5'
22933 5' -55.8 NC_005137.2 + 95602 0.74 0.459157
Target:  5'- --cCGCGCACuGUGCGCGACGuGCuguuuaacgaGUCGu -3'
miRNA:   3'- caaGCGCGUG-CACGUGCUGC-CG----------UAGC- -5'
22933 5' -55.8 NC_005137.2 + 110707 0.74 0.487517
Target:  5'- --aUGCGCGCGUGCGCaACGGUGUgCGc -3'
miRNA:   3'- caaGCGCGUGCACGUGcUGCCGUA-GC- -5'
22933 5' -55.8 NC_005137.2 + 128878 0.73 0.534507
Target:  5'- --aCGCGaacacucuaaggGCGUGCACGACGGCA-CGu -3'
miRNA:   3'- caaGCGCg-----------UGCACGUGCUGCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 32194 0.72 0.556583
Target:  5'- --aCGCGguCGgcGCACGGCGGCGUUu -3'
miRNA:   3'- caaGCGCguGCa-CGUGCUGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 75978 0.72 0.576876
Target:  5'- --gCGCGUugGUGCACGGC-GCA-CGg -3'
miRNA:   3'- caaGCGCGugCACGUGCUGcCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 46216 0.72 0.607596
Target:  5'- ---gGCGCACGcugUGCAgCGGCGGCAUa- -3'
miRNA:   3'- caagCGCGUGC---ACGU-GCUGCCGUAgc -5'
22933 5' -55.8 NC_005137.2 + 31788 0.72 0.607596
Target:  5'- cGUcCGCGCGCGUGCACuGACcguuGGCcgCc -3'
miRNA:   3'- -CAaGCGCGUGCACGUG-CUG----CCGuaGc -5'
22933 5' -55.8 NC_005137.2 + 48326 0.71 0.617883
Target:  5'- -gUCGCGCACG-GCcuUGGCGGCA-CGu -3'
miRNA:   3'- caAGCGCGUGCaCGu-GCUGCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 37602 0.71 0.628181
Target:  5'- ---aGCGCAaauacgugGUGCGCGGCGGCAaUCa -3'
miRNA:   3'- caagCGCGUg-------CACGUGCUGCCGU-AGc -5'
22933 5' -55.8 NC_005137.2 + 33763 0.71 0.638482
Target:  5'- --aCGCaugGCcauUGUGCGCGGCGGCGUUGu -3'
miRNA:   3'- caaGCG---CGu--GCACGUGCUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 65572 0.71 0.648778
Target:  5'- --aCGCGUAUGUGUACacgggcaACGGCAUUGg -3'
miRNA:   3'- caaGCGCGUGCACGUGc------UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 44103 0.7 0.679551
Target:  5'- -aUCGCuGCugGUGCugGAC-GCGUgGg -3'
miRNA:   3'- caAGCG-CGugCACGugCUGcCGUAgC- -5'
22933 5' -55.8 NC_005137.2 + 63801 0.7 0.689741
Target:  5'- cGggCGCGaCGCGaUGCgcgaccgucgccGCGGCGGCGUUGa -3'
miRNA:   3'- -CaaGCGC-GUGC-ACG------------UGCUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 100124 0.7 0.699884
Target:  5'- -cUgGCGCACGaagagGCGCG-CGGCcgCGg -3'
miRNA:   3'- caAgCGCGUGCa----CGUGCuGCCGuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.