miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22933 5' -55.8 NC_005137.2 + 43979 0.66 0.878418
Target:  5'- -aUCGCGUucgACGgGCGCGgGCGGCugcUCGu -3'
miRNA:   3'- caAGCGCG---UGCaCGUGC-UGCCGu--AGC- -5'
22933 5' -55.8 NC_005137.2 + 77075 0.67 0.871133
Target:  5'- -aUCGCGCACGgGCAa-AgGGCAUUu -3'
miRNA:   3'- caAGCGCGUGCaCGUgcUgCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 38495 0.67 0.871133
Target:  5'- uUUCGgGCACGUugGCcCGcCGGCAUUu -3'
miRNA:   3'- cAAGCgCGUGCA--CGuGCuGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 115754 0.67 0.871133
Target:  5'- --aCGCa-ACGUGCGCGcGCGGCGUUu -3'
miRNA:   3'- caaGCGcgUGCACGUGC-UGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 115898 0.67 0.848001
Target:  5'- --gCGCGCACGUugcguuGCACcuUGGCGUCc -3'
miRNA:   3'- caaGCGCGUGCA------CGUGcuGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 2592 0.67 0.848001
Target:  5'- -gUCGgGCGCGgGCACGuCGGCcaccgCGu -3'
miRNA:   3'- caAGCgCGUGCaCGUGCuGCCGua---GC- -5'
22933 5' -55.8 NC_005137.2 + 21194 0.67 0.845587
Target:  5'- uGUUUGCGCACGUggauGCuucgcagaguuuuuACGugGGCGaCGc -3'
miRNA:   3'- -CAAGCGCGUGCA----CG--------------UGCugCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 22477 0.67 0.845587
Target:  5'- aUUCGUGCACGUGaaaaccgugcaagcCGCG-CGGCAa-- -3'
miRNA:   3'- cAAGCGCGUGCAC--------------GUGCuGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 18948 0.67 0.839885
Target:  5'- -gUCGCGCGCa-GC-CGACuuGGCGUCa -3'
miRNA:   3'- caAGCGCGUGcaCGuGCUG--CCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 17511 0.67 0.839885
Target:  5'- uGUUCgGUGCGCGUuaACGAgGGCG-CGc -3'
miRNA:   3'- -CAAG-CGCGUGCAcgUGCUgCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 55564 0.67 0.839885
Target:  5'- ---gGCGC-CGUGCGCGugGaGCAa-- -3'
miRNA:   3'- caagCGCGuGCACGUGCugC-CGUagc -5'
22933 5' -55.8 NC_005137.2 + 5062 0.67 0.831577
Target:  5'- --aCGuCGUGCGUGCGCcgcgacauugaGACGGCgcGUCGa -3'
miRNA:   3'- caaGC-GCGUGCACGUG-----------CUGCCG--UAGC- -5'
22933 5' -55.8 NC_005137.2 + 20670 0.67 0.831577
Target:  5'- -gUCgGCGUGCGUGUAacaaaGACGGCAg-- -3'
miRNA:   3'- caAG-CGCGUGCACGUg----CUGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 108126 0.68 0.826504
Target:  5'- -aUCGCaGCAccgcaucccggucguCGgGCgGCGGCGGCGUCGg -3'
miRNA:   3'- caAGCG-CGU---------------GCaCG-UGCUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 55186 0.68 0.823086
Target:  5'- -aUCGuUGUcCGUGCugGugGGCGUUu -3'
miRNA:   3'- caAGC-GCGuGCACGugCugCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 117133 0.68 0.814418
Target:  5'- -gUCGCGUugGUGggauGCGGCGGUAa-- -3'
miRNA:   3'- caAGCGCGugCACg---UGCUGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 46873 0.68 0.814418
Target:  5'- -gUgGCGCGCGUGgAa-ACGGUGUCGa -3'
miRNA:   3'- caAgCGCGUGCACgUgcUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 64800 0.68 0.814418
Target:  5'- --cCGCGCcaacAUGUGCaccgaaucggGCGACGGCGUUu -3'
miRNA:   3'- caaGCGCG----UGCACG----------UGCUGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 61128 0.68 0.79659
Target:  5'- cGUUCGUGUugGUGCAa-ACGuCGUCGc -3'
miRNA:   3'- -CAAGCGCGugCACGUgcUGCcGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 72521 0.68 0.787445
Target:  5'- -aUUGCGCguguacacuaGCGUGCACGcggaGCGGCGcagcUCGc -3'
miRNA:   3'- caAGCGCG----------UGCACGUGC----UGCCGU----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.