miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22933 5' -55.8 NC_005137.2 + 1999 0.66 0.905287
Target:  5'- --gCGUGCAcagcuCGUGCACGcuGCGGCGc-- -3'
miRNA:   3'- caaGCGCGU-----GCACGUGC--UGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 2592 0.67 0.848001
Target:  5'- -gUCGgGCGCGgGCACGuCGGCcaccgCGu -3'
miRNA:   3'- caAGCgCGUGCaCGUGCuGCCGua---GC- -5'
22933 5' -55.8 NC_005137.2 + 5062 0.67 0.831577
Target:  5'- --aCGuCGUGCGUGCGCcgcgacauugaGACGGCgcGUCGa -3'
miRNA:   3'- caaGC-GCGUGCACGUG-----------CUGCCG--UAGC- -5'
22933 5' -55.8 NC_005137.2 + 5567 0.66 0.878418
Target:  5'- --aCGCGCucgcaaugggagACGUGUAUGgccguuuuuGCGGCAUUGg -3'
miRNA:   3'- caaGCGCG------------UGCACGUGC---------UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 7175 0.66 0.905287
Target:  5'- -aUCGCGCGCGuUGCAgcgcauuuCGAacCGGCG-CGu -3'
miRNA:   3'- caAGCGCGUGC-ACGU--------GCU--GCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 9668 0.66 0.878418
Target:  5'- uGUUCGUcaACGUGacaaGCGGCGGCAg-- -3'
miRNA:   3'- -CAAGCGcgUGCACg---UGCUGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 13223 0.7 0.709968
Target:  5'- aGUUCGgGCGCGUuucGCAaacGCGGUGUCGu -3'
miRNA:   3'- -CAAGCgCGUGCA---CGUgc-UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 16596 0.74 0.449899
Target:  5'- --gCGCGCAUugaUGCGCGGCGGC-UCGa -3'
miRNA:   3'- caaGCGCGUGc--ACGUGCUGCCGuAGC- -5'
22933 5' -55.8 NC_005137.2 + 17301 0.66 0.892314
Target:  5'- -aUCGUauaauaguuGCGCGUGCugGugACGGCAa-- -3'
miRNA:   3'- caAGCG---------CGUGCACGugC--UGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 17465 0.69 0.759198
Target:  5'- --aCGCGCACGUcGCACaGC-GCGUCa -3'
miRNA:   3'- caaGCGCGUGCA-CGUGcUGcCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 17511 0.67 0.839885
Target:  5'- uGUUCgGUGCGCGUuaACGAgGGCG-CGc -3'
miRNA:   3'- -CAAG-CGCGUGCAcgUGCUgCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 18948 0.67 0.839885
Target:  5'- -gUCGCGCGCa-GC-CGACuuGGCGUCa -3'
miRNA:   3'- caAGCGCGUGcaCGuGCUG--CCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 20670 0.67 0.831577
Target:  5'- -gUCgGCGUGCGUGUAacaaaGACGGCAg-- -3'
miRNA:   3'- caAG-CGCGUGCACGUg----CUGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 21194 0.67 0.845587
Target:  5'- uGUUUGCGCACGUggauGCuucgcagaguuuuuACGugGGCGaCGc -3'
miRNA:   3'- -CAAGCGCGUGCA----CG--------------UGCugCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 22477 0.67 0.845587
Target:  5'- aUUCGUGCACGUGaaaaccgugcaagcCGCG-CGGCAa-- -3'
miRNA:   3'- cAAGCGCGUGCAC--------------GUGCuGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 26799 0.68 0.778159
Target:  5'- uGUUCGCGCugcgACGcGCACGcuuguACGaGCGUCa -3'
miRNA:   3'- -CAAGCGCG----UGCaCGUGC-----UGC-CGUAGc -5'
22933 5' -55.8 NC_005137.2 + 26840 0.66 0.898918
Target:  5'- cGUUCaGCGCcaucaaACGUucGCACGuGCGuGCGUCGu -3'
miRNA:   3'- -CAAG-CGCG------UGCA--CGUGC-UGC-CGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 31788 0.72 0.607596
Target:  5'- cGUcCGCGCGCGUGCACuGACcguuGGCcgCc -3'
miRNA:   3'- -CAaGCGCGUGCACGUG-CUG----CCGuaGc -5'
22933 5' -55.8 NC_005137.2 + 31854 0.66 0.883384
Target:  5'- --aCGUGCACacgucgGUGCgaccgcacaaccacGCGGCGGUGUCGu -3'
miRNA:   3'- caaGCGCGUG------CACG--------------UGCUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 31980 0.69 0.759198
Target:  5'- aGUUCaUGUACGUGUAacGCGGCAUUGg -3'
miRNA:   3'- -CAAGcGCGUGCACGUgcUGCCGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.