miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22933 5' -55.8 NC_005137.2 + 5062 0.67 0.831577
Target:  5'- --aCGuCGUGCGUGCGCcgcgacauugaGACGGCgcGUCGa -3'
miRNA:   3'- caaGC-GCGUGCACGUG-----------CUGCCG--UAGC- -5'
22933 5' -55.8 NC_005137.2 + 43595 0.69 0.729926
Target:  5'- -cUCGCGCuguACGUGUACGAaaacGCAUCc -3'
miRNA:   3'- caAGCGCG---UGCACGUGCUgc--CGUAGc -5'
22933 5' -55.8 NC_005137.2 + 56500 0.69 0.739782
Target:  5'- -gUCGUGuCGCGUGUACGGCGuuaCGUUGg -3'
miRNA:   3'- caAGCGC-GUGCACGUGCUGCc--GUAGC- -5'
22933 5' -55.8 NC_005137.2 + 79667 0.69 0.76874
Target:  5'- gGUUUGUGCAg--GCGCGGCGGCGg-- -3'
miRNA:   3'- -CAAGCGCGUgcaCGUGCUGCCGUagc -5'
22933 5' -55.8 NC_005137.2 + 64155 0.68 0.778159
Target:  5'- ---aGCGCAccCGUGCGCGuuuaACGGCGcCGg -3'
miRNA:   3'- caagCGCGU--GCACGUGC----UGCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 61128 0.68 0.79659
Target:  5'- cGUUCGUGUugGUGCAa-ACGuCGUCGc -3'
miRNA:   3'- -CAAGCGCGugCACGUgcUGCcGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 64800 0.68 0.814418
Target:  5'- --cCGCGCcaacAUGUGCaccgaaucggGCGACGGCGUUu -3'
miRNA:   3'- caaGCGCG----UGCACG----------UGCUGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 55186 0.68 0.823086
Target:  5'- -aUCGuUGUcCGUGCugGugGGCGUUu -3'
miRNA:   3'- caAGC-GCGuGCACGugCugCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 108126 0.68 0.826504
Target:  5'- -aUCGCaGCAccgcaucccggucguCGgGCgGCGGCGGCGUCGg -3'
miRNA:   3'- caAGCG-CGU---------------GCaCG-UGCUGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 99941 0.7 0.719985
Target:  5'- --aCGCGCACGcaUGUugGAcaaCGGCcgCGg -3'
miRNA:   3'- caaGCGCGUGC--ACGugCU---GCCGuaGC- -5'
22933 5' -55.8 NC_005137.2 + 44103 0.7 0.679551
Target:  5'- -aUCGCuGCugGUGCugGAC-GCGUgGg -3'
miRNA:   3'- caAGCG-CGugCACGugCUGcCGUAgC- -5'
22933 5' -55.8 NC_005137.2 + 65572 0.71 0.648778
Target:  5'- --aCGCGUAUGUGUACacgggcaACGGCAUUGg -3'
miRNA:   3'- caaGCGCGUGCACGUGc------UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 112405 0.78 0.281808
Target:  5'- -aUCGCGCACG-GCGCGccauugugcaaguACGGCGUUGg -3'
miRNA:   3'- caAGCGCGUGCaCGUGC-------------UGCCGUAGC- -5'
22933 5' -55.8 NC_005137.2 + 16596 0.74 0.449899
Target:  5'- --gCGCGCAUugaUGCGCGGCGGC-UCGa -3'
miRNA:   3'- caaGCGCGUGc--ACGUGCUGCCGuAGC- -5'
22933 5' -55.8 NC_005137.2 + 95602 0.74 0.459157
Target:  5'- --cCGCGCACuGUGCGCGACGuGCuguuuaacgaGUCGu -3'
miRNA:   3'- caaGCGCGUG-CACGUGCUGC-CG----------UAGC- -5'
22933 5' -55.8 NC_005137.2 + 110707 0.74 0.487517
Target:  5'- --aUGCGCGCGUGCGCaACGGUGUgCGc -3'
miRNA:   3'- caaGCGCGUGCACGUGcUGCCGUA-GC- -5'
22933 5' -55.8 NC_005137.2 + 32194 0.72 0.556583
Target:  5'- --aCGCGguCGgcGCACGGCGGCGUUu -3'
miRNA:   3'- caaGCGCguGCa-CGUGCUGCCGUAGc -5'
22933 5' -55.8 NC_005137.2 + 75978 0.72 0.576876
Target:  5'- --gCGCGUugGUGCACGGC-GCA-CGg -3'
miRNA:   3'- caaGCGCGugCACGUGCUGcCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 48326 0.71 0.617883
Target:  5'- -gUCGCGCACG-GCcuUGGCGGCA-CGu -3'
miRNA:   3'- caAGCGCGUGCaCGu-GCUGCCGUaGC- -5'
22933 5' -55.8 NC_005137.2 + 33763 0.71 0.638482
Target:  5'- --aCGCaugGCcauUGUGCGCGGCGGCGUUGu -3'
miRNA:   3'- caaGCG---CGu--GCACGUGCUGCCGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.