miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22934 3' -50.2 NC_005137.2 + 128766 0.66 0.992927
Target:  5'- cAAAgGUaAACGCGAUCGCGcgCCc- -3'
miRNA:   3'- cUUUgCGcUUGCGUUAGCGCuaGGaa -5'
22934 3' -50.2 NC_005137.2 + 9213 0.66 0.992612
Target:  5'- cAAACGCGAugGCAcguucacaauaaacGUCGUGGcuugCCa- -3'
miRNA:   3'- cUUUGCGCUugCGU--------------UAGCGCUa---GGaa -5'
22934 3' -50.2 NC_005137.2 + 2401 0.66 0.991716
Target:  5'- -cAACGC--GCGCAAUCGCGccaaauggguaauGUCCg- -3'
miRNA:   3'- cuUUGCGcuUGCGUUAGCGC-------------UAGGaa -5'
22934 3' -50.2 NC_005137.2 + 96476 0.66 0.987727
Target:  5'- ---cCGCGAACGCAacacggugcgcGUCGUG-UCCa- -3'
miRNA:   3'- cuuuGCGCUUGCGU-----------UAGCGCuAGGaa -5'
22934 3' -50.2 NC_005137.2 + 52104 0.66 0.987727
Target:  5'- ---gUGCGGACaGUAAUCGCGAaacgCCUc -3'
miRNA:   3'- cuuuGCGCUUG-CGUUAGCGCUa---GGAa -5'
22934 3' -50.2 NC_005137.2 + 88281 0.67 0.986052
Target:  5'- aAAACGCGcACGCGuccguuccuuAUCGCG-UCCg- -3'
miRNA:   3'- cUUUGCGCuUGCGU----------UAGCGCuAGGaa -5'
22934 3' -50.2 NC_005137.2 + 112552 0.67 0.982183
Target:  5'- -uGGCGCGccguGCGCGAUCGCGcaAUCa-- -3'
miRNA:   3'- cuUUGCGCu---UGCGUUAGCGC--UAGgaa -5'
22934 3' -50.2 NC_005137.2 + 100023 0.67 0.97997
Target:  5'- ----aGCGGuGCGCAAgcaCGCGGUCCg- -3'
miRNA:   3'- cuuugCGCU-UGCGUUa--GCGCUAGGaa -5'
22934 3' -50.2 NC_005137.2 + 57490 0.67 0.97997
Target:  5'- uGAGACGCGAAUuGCcGUCGCGc-CCa- -3'
miRNA:   3'- -CUUUGCGCUUG-CGuUAGCGCuaGGaa -5'
22934 3' -50.2 NC_005137.2 + 13631 0.68 0.969045
Target:  5'- ---uUGCGAcugucguuguACGCGAUCGCGuUCCa- -3'
miRNA:   3'- cuuuGCGCU----------UGCGUUAGCGCuAGGaa -5'
22934 3' -50.2 NC_005137.2 + 62726 0.68 0.962225
Target:  5'- -cGugGCGuuuCGCAAUUGCGAaaguaUCCUg -3'
miRNA:   3'- cuUugCGCuu-GCGUUAGCGCU-----AGGAa -5'
22934 3' -50.2 NC_005137.2 + 34030 0.69 0.945602
Target:  5'- uAAACGC-AACGCAAUCGCGcUCa-- -3'
miRNA:   3'- cUUUGCGcUUGCGUUAGCGCuAGgaa -5'
22934 3' -50.2 NC_005137.2 + 63801 0.7 0.930387
Target:  5'- cGGGCGCG-ACGCGAUgCGCGA-CCg- -3'
miRNA:   3'- cUUUGCGCuUGCGUUA-GCGCUaGGaa -5'
22934 3' -50.2 NC_005137.2 + 34963 0.7 0.918903
Target:  5'- aGAAACGCu-GCGCAcuGUCGCGuUCCc- -3'
miRNA:   3'- -CUUUGCGcuUGCGU--UAGCGCuAGGaa -5'
22934 3' -50.2 NC_005137.2 + 80258 0.7 0.918903
Target:  5'- -cGGCGCGAACGCcGUgGCGGagguUCCg- -3'
miRNA:   3'- cuUUGCGCUUGCGuUAgCGCU----AGGaa -5'
22934 3' -50.2 NC_005137.2 + 95491 0.71 0.885545
Target:  5'- cGAACGU--GCGCGuUCGCGGUCCa- -3'
miRNA:   3'- cUUUGCGcuUGCGUuAGCGCUAGGaa -5'
22934 3' -50.2 NC_005137.2 + 28541 0.71 0.8781
Target:  5'- -uGACGUGAACGguggauaAAUCGUGAUCCa- -3'
miRNA:   3'- cuUUGCGCUUGCg------UUAGCGCUAGGaa -5'
22934 3' -50.2 NC_005137.2 + 111946 0.72 0.845921
Target:  5'- -cGugGUGAGCGUuuuGAUgGCGAUCCUg -3'
miRNA:   3'- cuUugCGCUUGCG---UUAgCGCUAGGAa -5'
22934 3' -50.2 NC_005137.2 + 41247 1.05 0.014701
Target:  5'- gGAAACGCGAACGCAAUCGCGAUCCUUu -3'
miRNA:   3'- -CUUUGCGCUUGCGUUAGCGCUAGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.