miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22935 3' -60.5 NC_005137.2 + 129860 0.65 0.690366
Target:  5'- gGCGCCAcaaacgcuuGCGUuguuucagguauaGGaggaguuaaaggugGCGGCGGCGgCAACg -3'
miRNA:   3'- -UGUGGU---------UGCA-------------CC--------------CGCCGCCGCgGUUG- -5'
22935 3' -60.5 NC_005137.2 + 37602 0.66 0.684385
Target:  5'- aGCGCaaauACGUGGuGC-GCGGCGgCAAUc -3'
miRNA:   3'- -UGUGgu--UGCACC-CGcCGCCGCgGUUG- -5'
22935 3' -60.5 NC_005137.2 + 90691 0.66 0.681389
Target:  5'- gACGCCGACuuuuauuauccgcuGGUGGUGcGUGCCAGCa -3'
miRNA:   3'- -UGUGGUUGcac-----------CCGCCGC-CGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 99301 0.66 0.674385
Target:  5'- uGCGCuuCAugGUGGGCgGGCcGCuGCCAu- -3'
miRNA:   3'- -UGUG--GUugCACCCG-CCGcCG-CGGUug -5'
22935 3' -60.5 NC_005137.2 + 29517 0.66 0.664352
Target:  5'- cACGCCAGuuuuUGUGGGUGcGCcGCGaCAACa -3'
miRNA:   3'- -UGUGGUU----GCACCCGC-CGcCGCgGUUG- -5'
22935 3' -60.5 NC_005137.2 + 103812 0.66 0.654293
Target:  5'- -uGCUggUGUGcGGCGGCggguuGGUGCaCGGCa -3'
miRNA:   3'- ugUGGuuGCAC-CCGCCG-----CCGCG-GUUG- -5'
22935 3' -60.5 NC_005137.2 + 64881 0.66 0.644217
Target:  5'- uCGCCggUGaacGGGUugaGGCcuacGGCGCCGACg -3'
miRNA:   3'- uGUGGuuGCa--CCCG---CCG----CCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 100038 0.66 0.644217
Target:  5'- cGCGguCCGACGc-GGCGcGCGGCGCguuCAGCa -3'
miRNA:   3'- -UGU--GGUUGCacCCGC-CGCCGCG---GUUG- -5'
22935 3' -60.5 NC_005137.2 + 13270 0.66 0.644217
Target:  5'- -gGCCGGCGUGGGUaGCacCGCCAGa -3'
miRNA:   3'- ugUGGUUGCACCCGcCGccGCGGUUg -5'
22935 3' -60.5 NC_005137.2 + 38648 0.66 0.634131
Target:  5'- -aAUCGACGcUGGGCaGGCGcGCGUugCGGCa -3'
miRNA:   3'- ugUGGUUGC-ACCCG-CCGC-CGCG--GUUG- -5'
22935 3' -60.5 NC_005137.2 + 115421 0.66 0.634131
Target:  5'- uCGCCAA----GGUcGCGGCGCCAGCg -3'
miRNA:   3'- uGUGGUUgcacCCGcCGCCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 20004 0.67 0.624045
Target:  5'- uCACUGGCGUaaacGGGCGGCGGagGCUu-- -3'
miRNA:   3'- uGUGGUUGCA----CCCGCCGCCg-CGGuug -5'
22935 3' -60.5 NC_005137.2 + 63005 0.67 0.613964
Target:  5'- gAC-CCAugGUGcGGCGcCGGCGUguCGGCa -3'
miRNA:   3'- -UGuGGUugCAC-CCGCcGCCGCG--GUUG- -5'
22935 3' -60.5 NC_005137.2 + 96195 0.67 0.613964
Target:  5'- uCGCUAAguUGGGCGGCGGUGgCUugaAACa -3'
miRNA:   3'- uGUGGUUgcACCCGCCGCCGC-GG---UUG- -5'
22935 3' -60.5 NC_005137.2 + 20622 0.67 0.603896
Target:  5'- aACAgCGACaUGGGCguGGUGGCGCUc-- -3'
miRNA:   3'- -UGUgGUUGcACCCG--CCGCCGCGGuug -5'
22935 3' -60.5 NC_005137.2 + 112457 0.67 0.603896
Target:  5'- cGCGgCGGCaggaUGGGCGaCGGCGCCGu- -3'
miRNA:   3'- -UGUgGUUGc---ACCCGCcGCCGCGGUug -5'
22935 3' -60.5 NC_005137.2 + 24322 0.67 0.593849
Target:  5'- cCGCCucACG-GGGUGGUGGUGCgauaAACa -3'
miRNA:   3'- uGUGGu-UGCaCCCGCCGCCGCGg---UUG- -5'
22935 3' -60.5 NC_005137.2 + 96033 0.67 0.583829
Target:  5'- cGCACCAugccCGUGucGGCGGUG-UGCCGAUu -3'
miRNA:   3'- -UGUGGUu---GCAC--CCGCCGCcGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 31682 0.67 0.573843
Target:  5'- gACACCGccGCGUGGuuguGCGGUcGCaCCGACg -3'
miRNA:   3'- -UGUGGU--UGCACC----CGCCGcCGcGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 72791 0.68 0.563897
Target:  5'- uCACCcacGCGUuGGCGGCGcGCGCUg-- -3'
miRNA:   3'- uGUGGu--UGCAcCCGCCGC-CGCGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.