miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22935 3' -60.5 NC_005137.2 + 101555 0.68 0.563897
Target:  5'- gACAUCGAUugggaGUuuccGGGUGGUaaaGGCGCCAACc -3'
miRNA:   3'- -UGUGGUUG-----CA----CCCGCCG---CCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 72511 0.68 0.563897
Target:  5'- uACACUAGCGUGcacGCGgaGCGGCG-CAGCu -3'
miRNA:   3'- -UGUGGUUGCACc--CGC--CGCCGCgGUUG- -5'
22935 3' -60.5 NC_005137.2 + 110980 0.68 0.562905
Target:  5'- cGCACgAcucuugcGCGUcGGCgGGCGGCGUCGAUu -3'
miRNA:   3'- -UGUGgU-------UGCAcCCG-CCGCCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 107128 0.68 0.553997
Target:  5'- aACAagCGACGaaGGCGGCGGCggguugggugacGCCGACc -3'
miRNA:   3'- -UGUg-GUUGCacCCGCCGCCG------------CGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 97990 0.68 0.54415
Target:  5'- gGCGCgCGGCGUGGGUGcGCc-CGCCAAg -3'
miRNA:   3'- -UGUG-GUUGCACCCGC-CGccGCGGUUg -5'
22935 3' -60.5 NC_005137.2 + 121746 0.68 0.538269
Target:  5'- uGCGCCggUG-GGGCGGUugcauaacuauaaugGGUguGCCGGCg -3'
miRNA:   3'- -UGUGGuuGCaCCCGCCG---------------CCG--CGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 22624 0.69 0.495881
Target:  5'- uUACCGGCGUGaGcGCGGUG-CaGCCGACg -3'
miRNA:   3'- uGUGGUUGCAC-C-CGCCGCcG-CGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 88047 0.69 0.486454
Target:  5'- cCACC-ACGUGGGaCGGCGuG-GCCAu- -3'
miRNA:   3'- uGUGGuUGCACCC-GCCGC-CgCGGUug -5'
22935 3' -60.5 NC_005137.2 + 27303 0.69 0.486454
Target:  5'- cCACCugAACG-GuGGCGGCGGCGUUuugGGCa -3'
miRNA:   3'- uGUGG--UUGCaC-CCGCCGCCGCGG---UUG- -5'
22935 3' -60.5 NC_005137.2 + 95510 0.69 0.458704
Target:  5'- uCGCUGACGUGGcCGGUGGCGaCUuGCg -3'
miRNA:   3'- uGUGGUUGCACCcGCCGCCGC-GGuUG- -5'
22935 3' -60.5 NC_005137.2 + 46022 0.7 0.431821
Target:  5'- uACGCCAACGUGcaauGUuuaaaCGGCGCCAACg -3'
miRNA:   3'- -UGUGGUUGCACc---CGcc---GCCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 33769 0.7 0.405882
Target:  5'- -gGCCAuUGUGcGCGGCGGCguugugcuguGCCAACg -3'
miRNA:   3'- ugUGGUuGCACcCGCCGCCG----------CGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 104695 0.71 0.389142
Target:  5'- cGCGaCAACGUGGGCcGCGGCGUguGg -3'
miRNA:   3'- -UGUgGUUGCACCCGcCGCCGCGguUg -5'
22935 3' -60.5 NC_005137.2 + 125309 0.71 0.389142
Target:  5'- cGCGCCAuCGUGucaGCGGCGGUGCauugucaaGACg -3'
miRNA:   3'- -UGUGGUuGCACc--CGCCGCCGCGg-------UUG- -5'
22935 3' -60.5 NC_005137.2 + 12784 0.71 0.377697
Target:  5'- uGCGCCaAAUGUugggguaauggaccGGGUGGCGucccacaGCGCCAACg -3'
miRNA:   3'- -UGUGG-UUGCA--------------CCCGCCGC-------CGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 79607 0.71 0.364897
Target:  5'- cAUAUCAAUuaGUGGaGCGGCcGCGCUAGCa -3'
miRNA:   3'- -UGUGGUUG--CACC-CGCCGcCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 48407 0.71 0.35705
Target:  5'- gACGCCGaggAUGUGGGCGacgguaaCGGCGgCAGCa -3'
miRNA:   3'- -UGUGGU---UGCACCCGCc------GCCGCgGUUG- -5'
22935 3' -60.5 NC_005137.2 + 106195 0.72 0.341716
Target:  5'- aACACCAuccgcACGUGGGaC-GCGGuCGCCAAg -3'
miRNA:   3'- -UGUGGU-----UGCACCC-GcCGCC-GCGGUUg -5'
22935 3' -60.5 NC_005137.2 + 88197 0.72 0.326863
Target:  5'- cACGCCGucccACGUGGuggcccgccucgGCGGUGGCcgcGCCGGCa -3'
miRNA:   3'- -UGUGGU----UGCACC------------CGCCGCCG---CGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 46190 0.72 0.319617
Target:  5'- gACACCGAUuggaauguaaaaGUGGGUcuuGGCauauuuccgGGCGCCAACa -3'
miRNA:   3'- -UGUGGUUG------------CACCCG---CCG---------CCGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.