miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22935 3' -60.5 NC_005137.2 + 7502 0.73 0.298608
Target:  5'- gGCACCAGCaacaUGacucaacuGGCGG-GGCGCCAGCa -3'
miRNA:   3'- -UGUGGUUGc---AC--------CCGCCgCCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 12784 0.71 0.377697
Target:  5'- uGCGCCaAAUGUugggguaauggaccGGGUGGCGucccacaGCGCCAACg -3'
miRNA:   3'- -UGUGG-UUGCA--------------CCCGCCGC-------CGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 13270 0.66 0.644217
Target:  5'- -gGCCGGCGUGGGUaGCacCGCCAGa -3'
miRNA:   3'- ugUGGUUGCACCCGcCGccGCGGUUg -5'
22935 3' -60.5 NC_005137.2 + 20004 0.67 0.624045
Target:  5'- uCACUGGCGUaaacGGGCGGCGGagGCUu-- -3'
miRNA:   3'- uGUGGUUGCA----CCCGCCGCCg-CGGuug -5'
22935 3' -60.5 NC_005137.2 + 20622 0.67 0.603896
Target:  5'- aACAgCGACaUGGGCguGGUGGCGCUc-- -3'
miRNA:   3'- -UGUgGUUGcACCCG--CCGCCGCGGuug -5'
22935 3' -60.5 NC_005137.2 + 22624 0.69 0.495881
Target:  5'- uUACCGGCGUGaGcGCGGUG-CaGCCGACg -3'
miRNA:   3'- uGUGGUUGCAC-C-CGCCGCcG-CGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 24322 0.67 0.593849
Target:  5'- cCGCCucACG-GGGUGGUGGUGCgauaAACa -3'
miRNA:   3'- uGUGGu-UGCaCCCGCCGCCGCGg---UUG- -5'
22935 3' -60.5 NC_005137.2 + 27303 0.69 0.486454
Target:  5'- cCACCugAACG-GuGGCGGCGGCGUUuugGGCa -3'
miRNA:   3'- uGUGG--UUGCaC-CCGCCGCCGCGG---UUG- -5'
22935 3' -60.5 NC_005137.2 + 29517 0.66 0.664352
Target:  5'- cACGCCAGuuuuUGUGGGUGcGCcGCGaCAACa -3'
miRNA:   3'- -UGUGGUU----GCACCCGC-CGcCGCgGUUG- -5'
22935 3' -60.5 NC_005137.2 + 31682 0.67 0.573843
Target:  5'- gACACCGccGCGUGGuuguGCGGUcGCaCCGACg -3'
miRNA:   3'- -UGUGGU--UGCACC----CGCCGcCGcGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 33769 0.7 0.405882
Target:  5'- -gGCCAuUGUGcGCGGCGGCguugugcuguGCCAACg -3'
miRNA:   3'- ugUGGUuGCACcCGCCGCCG----------CGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 37602 0.66 0.684385
Target:  5'- aGCGCaaauACGUGGuGC-GCGGCGgCAAUc -3'
miRNA:   3'- -UGUGgu--UGCACC-CGcCGCCGCgGUUG- -5'
22935 3' -60.5 NC_005137.2 + 38648 0.66 0.634131
Target:  5'- -aAUCGACGcUGGGCaGGCGcGCGUugCGGCa -3'
miRNA:   3'- ugUGGUUGC-ACCCG-CCGC-CGCG--GUUG- -5'
22935 3' -60.5 NC_005137.2 + 45669 1.09 0.000899
Target:  5'- uACACCAACGUGGGCGGCGGCGCCAACg -3'
miRNA:   3'- -UGUGGUUGCACCCGCCGCCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 46022 0.7 0.431821
Target:  5'- uACGCCAACGUGcaauGUuuaaaCGGCGCCAACg -3'
miRNA:   3'- -UGUGGUUGCACc---CGcc---GCCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 46190 0.72 0.319617
Target:  5'- gACACCGAUuggaauguaaaaGUGGGUcuuGGCauauuuccgGGCGCCAACa -3'
miRNA:   3'- -UGUGGUUG------------CACCCG---CCG---------CCGCGGUUG- -5'
22935 3' -60.5 NC_005137.2 + 46635 0.73 0.272283
Target:  5'- cCGCCAugGUGGaCaGCGGCGCUAAg -3'
miRNA:   3'- uGUGGUugCACCcGcCGCCGCGGUUg -5'
22935 3' -60.5 NC_005137.2 + 48407 0.71 0.35705
Target:  5'- gACGCCGaggAUGUGGGCGacgguaaCGGCGgCAGCa -3'
miRNA:   3'- -UGUGGU---UGCACCCGCc------GCCGCgGUUG- -5'
22935 3' -60.5 NC_005137.2 + 63005 0.67 0.613964
Target:  5'- gAC-CCAugGUGcGGCGcCGGCGUguCGGCa -3'
miRNA:   3'- -UGuGGUugCAC-CCGCcGCCGCG--GUUG- -5'
22935 3' -60.5 NC_005137.2 + 64881 0.66 0.644217
Target:  5'- uCGCCggUGaacGGGUugaGGCcuacGGCGCCGACg -3'
miRNA:   3'- uGUGGuuGCa--CCCG---CCG----CCGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.