miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22935 5' -48.4 NC_005137.2 + 67491 0.66 0.997576
Target:  5'- -----aACGUUugCUGCGUCAaUAUCc -3'
miRNA:   3'- aauaacUGCGGugGACGCAGUaAUAG- -5'
22935 5' -48.4 NC_005137.2 + 57481 0.66 0.997101
Target:  5'- ----cGACGCCGuuUGCG-CGUUucGUCa -3'
miRNA:   3'- aauaaCUGCGGUggACGCaGUAA--UAG- -5'
22935 5' -48.4 NC_005137.2 + 72459 0.66 0.997101
Target:  5'- ---gUGGCGCCGCguugGCGUCAa---- -3'
miRNA:   3'- aauaACUGCGGUGga--CGCAGUaauag -5'
22935 5' -48.4 NC_005137.2 + 24677 0.66 0.996551
Target:  5'- --uUUGcCGCCACC-GCcGUCGUgGUCa -3'
miRNA:   3'- aauAACuGCGGUGGaCG-CAGUAaUAG- -5'
22935 5' -48.4 NC_005137.2 + 72860 0.66 0.995917
Target:  5'- gUUGUUGACGCUAaggcGCGUCAgguugUAUUg -3'
miRNA:   3'- -AAUAACUGCGGUgga-CGCAGUa----AUAG- -5'
22935 5' -48.4 NC_005137.2 + 45826 0.66 0.995917
Target:  5'- -cGUUGGCGCCGCCgcccaCGUUggUGUa -3'
miRNA:   3'- aaUAACUGCGGUGGac---GCAGuaAUAg -5'
22935 5' -48.4 NC_005137.2 + 80167 0.67 0.993425
Target:  5'- -cGUUGcCGCCGuuUGCG-CGUUGUUa -3'
miRNA:   3'- aaUAACuGCGGUggACGCaGUAAUAG- -5'
22935 5' -48.4 NC_005137.2 + 55428 0.68 0.986703
Target:  5'- ----cGGCGCCGCCcGCGUCc----- -3'
miRNA:   3'- aauaaCUGCGGUGGaCGCAGuaauag -5'
22935 5' -48.4 NC_005137.2 + 35555 0.69 0.983081
Target:  5'- ----gGGCGCgCGCCgauuccaaaugcgucGCGUCAUUGUCc -3'
miRNA:   3'- aauaaCUGCG-GUGGa--------------CGCAGUAAUAG- -5'
22935 5' -48.4 NC_005137.2 + 2732 0.71 0.950554
Target:  5'- ----aGGuCGCCACCUGCGUUAa---- -3'
miRNA:   3'- aauaaCU-GCGGUGGACGCAGUaauag -5'
22935 5' -48.4 NC_005137.2 + 74663 0.73 0.884323
Target:  5'- ---aUGAgCGUCACCUGCGUCAc---- -3'
miRNA:   3'- aauaACU-GCGGUGGACGCAGUaauag -5'
22935 5' -48.4 NC_005137.2 + 45714 1.09 0.010548
Target:  5'- aUUAUUGACGCCACCUGCGUCAUUAUCa -3'
miRNA:   3'- -AAUAACUGCGGUGGACGCAGUAAUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.