miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22936 3' -47.8 NC_005137.2 + 5550 0.66 0.999467
Target:  5'- aUUGUg--GGAUcaaagacauugGCGACGUGCGuuaACGCg -3'
miRNA:   3'- cGAUAaaaCCUG-----------CGCUGCACGU---UGUG- -5'
22936 3' -47.8 NC_005137.2 + 91961 0.66 0.999467
Target:  5'- cGCUca--UGGACGUGuuuuCGgGCAACAUg -3'
miRNA:   3'- -CGAuaaaACCUGCGCu---GCaCGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 122549 0.66 0.999336
Target:  5'- aGCUAUUUgcaGGGCGCuaaGGCGgcggGCGugGg -3'
miRNA:   3'- -CGAUAAAa--CCUGCG---CUGCa---CGUugUg -5'
22936 3' -47.8 NC_005137.2 + 18404 0.66 0.999336
Target:  5'- -------cGGACGCGGCGccGCAgucgaacgacgcGCACa -3'
miRNA:   3'- cgauaaaaCCUGCGCUGCa-CGU------------UGUG- -5'
22936 3' -47.8 NC_005137.2 + 31869 0.66 0.999336
Target:  5'- cGCgaaac--GACGCGaACGUGCA-CACg -3'
miRNA:   3'- -CGauaaaacCUGCGC-UGCACGUuGUG- -5'
22936 3' -47.8 NC_005137.2 + 60846 0.66 0.999336
Target:  5'- uGUUGUUUacGGGCGCGucguCGUuaAGCGCu -3'
miRNA:   3'- -CGAUAAAa-CCUGCGCu---GCAcgUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 42661 0.66 0.999336
Target:  5'- aCUAcUUUGG-CGCGACGccaAGCGCg -3'
miRNA:   3'- cGAUaAAACCuGCGCUGCacgUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 105065 0.66 0.999244
Target:  5'- uGCUuuauuaGUUUUGGugGCcugggcccagcuaucGACGggugcugagcauUGCAACGCg -3'
miRNA:   3'- -CGA------UAAAACCugCG---------------CUGC------------ACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 12508 0.66 0.999176
Target:  5'- uGCUAUggaaGGugGaCGACGcUGUGGCAa -3'
miRNA:   3'- -CGAUAaaa-CCugC-GCUGC-ACGUUGUg -5'
22936 3' -47.8 NC_005137.2 + 112864 0.66 0.998986
Target:  5'- aCUAUcaUGGGCGUggacGACGUGCc-CGCg -3'
miRNA:   3'- cGAUAaaACCUGCG----CUGCACGuuGUG- -5'
22936 3' -47.8 NC_005137.2 + 46881 0.66 0.998986
Target:  5'- gGCUGg--UGGugGCGcGCGUGgaAACGg -3'
miRNA:   3'- -CGAUaaaACCugCGC-UGCACg-UUGUg -5'
22936 3' -47.8 NC_005137.2 + 62930 0.67 0.998489
Target:  5'- uGCUuUUUgggGGACG-GugGUGCGuCGCc -3'
miRNA:   3'- -CGAuAAAa--CCUGCgCugCACGUuGUG- -5'
22936 3' -47.8 NC_005137.2 + 56235 0.67 0.998489
Target:  5'- uGCguuUUggGGACGUGAUGccGCAccGCGCa -3'
miRNA:   3'- -CGau-AAaaCCUGCGCUGCa-CGU--UGUG- -5'
22936 3' -47.8 NC_005137.2 + 20271 0.67 0.998171
Target:  5'- ------cUGGcccaaGCGCGA-GUGCAGCGCa -3'
miRNA:   3'- cgauaaaACC-----UGCGCUgCACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 119865 0.67 0.997366
Target:  5'- cGCUGcgcggcgGGAUGCGuACGUGCuaagcuguguGCGCg -3'
miRNA:   3'- -CGAUaaaa---CCUGCGC-UGCACGu---------UGUG- -5'
22936 3' -47.8 NC_005137.2 + 64760 0.67 0.997366
Target:  5'- aUUGUUUUGGGcCGCaauuguauGACGUGUugAACGCu -3'
miRNA:   3'- cGAUAAAACCU-GCG--------CUGCACG--UUGUG- -5'
22936 3' -47.8 NC_005137.2 + 130349 0.67 0.996865
Target:  5'- cGCUAca--GGugGCGGCG-GCAcguuuACACc -3'
miRNA:   3'- -CGAUaaaaCCugCGCUGCaCGU-----UGUG- -5'
22936 3' -47.8 NC_005137.2 + 13723 0.67 0.996865
Target:  5'- uGCUAUuuUUUGccgacaaagaaGACGC--CGUGCAGCGCg -3'
miRNA:   3'- -CGAUA--AAAC-----------CUGCGcuGCACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 56581 0.68 0.996287
Target:  5'- cGUUAUgggacccGACGCGACGgGCGACGu -3'
miRNA:   3'- -CGAUAaaac---CUGCGCUGCaCGUUGUg -5'
22936 3' -47.8 NC_005137.2 + 99238 0.68 0.996287
Target:  5'- aUUGUUUUGGGCGCGcgcccCGuUGCcacgGGCACa -3'
miRNA:   3'- cGAUAAAACCUGCGCu----GC-ACG----UUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.