miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22936 3' -47.8 NC_005137.2 + 1606 0.68 0.996287
Target:  5'- uGCUA-UUUGGGCaaCGugGUGUcguGCACa -3'
miRNA:   3'- -CGAUaAAACCUGc-GCugCACGu--UGUG- -5'
22936 3' -47.8 NC_005137.2 + 2478 0.73 0.940408
Target:  5'- cGCUAUUUau-GCGCcGCGUGCGGCAUg -3'
miRNA:   3'- -CGAUAAAaccUGCGcUGCACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 5550 0.66 0.999467
Target:  5'- aUUGUg--GGAUcaaagacauugGCGACGUGCGuuaACGCg -3'
miRNA:   3'- cGAUAaaaCCUG-----------CGCUGCACGU---UGUG- -5'
22936 3' -47.8 NC_005137.2 + 12508 0.66 0.999176
Target:  5'- uGCUAUggaaGGugGaCGACGcUGUGGCAa -3'
miRNA:   3'- -CGAUAaaa-CCugC-GCUGC-ACGUUGUg -5'
22936 3' -47.8 NC_005137.2 + 13723 0.67 0.996865
Target:  5'- uGCUAUuuUUUGccgacaaagaaGACGC--CGUGCAGCGCg -3'
miRNA:   3'- -CGAUA--AAAC-----------CUGCGcuGCACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 13991 0.68 0.994868
Target:  5'- cGCUAUUggcccgacgUGGAuCGgGACGUGUuuuGCAa -3'
miRNA:   3'- -CGAUAAa--------ACCU-GCgCUGCACGu--UGUg -5'
22936 3' -47.8 NC_005137.2 + 18404 0.66 0.999336
Target:  5'- -------cGGACGCGGCGccGCAgucgaacgacgcGCACa -3'
miRNA:   3'- cgauaaaaCCUGCGCUGCa-CGU------------UGUG- -5'
22936 3' -47.8 NC_005137.2 + 20271 0.67 0.998171
Target:  5'- ------cUGGcccaaGCGCGA-GUGCAGCGCa -3'
miRNA:   3'- cgauaaaACC-----UGCGCUgCACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 24393 0.73 0.929848
Target:  5'- uGCUGU--UGGACGCGGCGU-CAGgcCGCc -3'
miRNA:   3'- -CGAUAaaACCUGCGCUGCAcGUU--GUG- -5'
22936 3' -47.8 NC_005137.2 + 25632 0.72 0.958296
Target:  5'- --aAUUUUGGAUG-GGCGUGUcGCGCa -3'
miRNA:   3'- cgaUAAAACCUGCgCUGCACGuUGUG- -5'
22936 3' -47.8 NC_005137.2 + 27546 0.68 0.996287
Target:  5'- cGCUAcUUUUGGcCGgaCGGCGUGCGuuuUACg -3'
miRNA:   3'- -CGAU-AAAACCuGC--GCUGCACGUu--GUG- -5'
22936 3' -47.8 NC_005137.2 + 31869 0.66 0.999336
Target:  5'- cGCgaaac--GACGCGaACGUGCA-CACg -3'
miRNA:   3'- -CGauaaaacCUGCGC-UGCACGUuGUG- -5'
22936 3' -47.8 NC_005137.2 + 33858 0.69 0.989354
Target:  5'- cGCUAUUUUGaagcgaauauugaGCGCGAUugcguugcguuuacgGUGCGACGCu -3'
miRNA:   3'- -CGAUAAAACc------------UGCGCUG---------------CACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 38654 0.69 0.993037
Target:  5'- cGCUGggca-GGCGCG-CGuUGCGGCACa -3'
miRNA:   3'- -CGAUaaaacCUGCGCuGC-ACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 39444 0.7 0.977607
Target:  5'- cGCacuUUUUGcGCGCGACGUGU-ACGCc -3'
miRNA:   3'- -CGau-AAAACcUGCGCUGCACGuUGUG- -5'
22936 3' -47.8 NC_005137.2 + 42661 0.66 0.999336
Target:  5'- aCUAcUUUGG-CGCGACGccaAGCGCg -3'
miRNA:   3'- cGAUaAAACCuGCGCUGCacgUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 46085 1.15 0.007049
Target:  5'- cGCUAUUUUGGACGCGACGUGCAACACg -3'
miRNA:   3'- -CGAUAAAACCUGCGCUGCACGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 46636 0.72 0.958296
Target:  5'- cGCcAUggUGGACaGCGGCGcuaaggGCAGCGCc -3'
miRNA:   3'- -CGaUAaaACCUG-CGCUGCa-----CGUUGUG- -5'
22936 3' -47.8 NC_005137.2 + 46881 0.66 0.998986
Target:  5'- gGCUGg--UGGugGCGcGCGUGgaAACGg -3'
miRNA:   3'- -CGAUaaaACCugCGC-UGCACg-UUGUg -5'
22936 3' -47.8 NC_005137.2 + 48769 0.8 0.640914
Target:  5'- cGCgaucgUUGGACGCGGCGccgcacagcgugUGCGGCACu -3'
miRNA:   3'- -CGauaa-AACCUGCGCUGC------------ACGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.