miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22936 5' -54.3 NC_005137.2 + 14005 0.66 0.931078
Target:  5'- cGUGGAUCgggACGUGUUuugcaAUCCCAACAa-- -3'
miRNA:   3'- -CACCUGG---UGCGCAG-----UGGGGUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 80376 0.66 0.931078
Target:  5'- ---aACCGCGCagccguUCACCCCAGCAc-- -3'
miRNA:   3'- caccUGGUGCGc-----AGUGGGGUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 12954 0.67 0.894788
Target:  5'- uGUGGgacGCCACcCGguccaUUACCCCAACAUUu -3'
miRNA:   3'- -CACC---UGGUGcGC-----AGUGGGGUUGUAAu -5'
22936 5' -54.3 NC_005137.2 + 112892 0.67 0.865693
Target:  5'- -cGGGCUGCGCGUa--CCCGACGc-- -3'
miRNA:   3'- caCCUGGUGCGCAgugGGGUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 3550 0.68 0.824361
Target:  5'- cGUGGuACCgucGCGCGUCACgCaCAACAc-- -3'
miRNA:   3'- -CACC-UGG---UGCGCAGUGgG-GUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 76422 0.69 0.806471
Target:  5'- cUGGACUcggccaACGUGUUuuGCCCCAACGa-- -3'
miRNA:   3'- cACCUGG------UGCGCAG--UGGGGUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 88127 0.69 0.806471
Target:  5'- ---aACCACGCGUCGCCCacgGACGg-- -3'
miRNA:   3'- caccUGGUGCGCAGUGGGg--UUGUaau -5'
22936 5' -54.3 NC_005137.2 + 29280 0.69 0.777441
Target:  5'- uUGGACguCGCGUCAagggacgUCCCAACGg-- -3'
miRNA:   3'- cACCUGguGCGCAGU-------GGGGUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 82877 0.69 0.768751
Target:  5'- -cGGAUgcaUugGCGUUugUCCAACAUUAu -3'
miRNA:   3'- caCCUG---GugCGCAGugGGGUUGUAAU- -5'
22936 5' -54.3 NC_005137.2 + 27892 0.7 0.728962
Target:  5'- cGUGGcggcGCCACGgGUCAUcgCCCGGCAa-- -3'
miRNA:   3'- -CACC----UGGUGCgCAGUG--GGGUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 64466 0.72 0.656289
Target:  5'- -cGGGCaaauuggcgcagCGCGCGUCACCCgAGCAa-- -3'
miRNA:   3'- caCCUG------------GUGCGCAGUGGGgUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 21242 0.75 0.480936
Target:  5'- -cGGGCCGCGUGUCACCaaAACGg-- -3'
miRNA:   3'- caCCUGGUGCGCAGUGGggUUGUaau -5'
22936 5' -54.3 NC_005137.2 + 46119 1.07 0.004077
Target:  5'- cGUGGACCACGCGUCACCCCAACAUUAg -3'
miRNA:   3'- -CACCUGGUGCGCAGUGGGGUUGUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.