miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22937 3' -51.8 NC_005137.2 + 12978 0.66 0.966452
Target:  5'- -cGAAAACUuugacGCCGUUGGCGCu--- -3'
miRNA:   3'- aaUUUUUGGua---CGGCGACCGCGugua -5'
22937 3' -51.8 NC_005137.2 + 9411 0.66 0.966452
Target:  5'- --cGAAACCGcaucGCCGCcaaagcgGGUGCGCAa -3'
miRNA:   3'- aauUUUUGGUa---CGGCGa------CCGCGUGUa -5'
22937 3' -51.8 NC_005137.2 + 29753 0.66 0.962923
Target:  5'- -gAGAAGCCGUauUCGCUGGCGUuCAa -3'
miRNA:   3'- aaUUUUUGGUAc-GGCGACCGCGuGUa -5'
22937 3' -51.8 NC_005137.2 + 115911 0.66 0.955108
Target:  5'- -gGAAAAC---GCCGC-GGCGCGCAc -3'
miRNA:   3'- aaUUUUUGguaCGGCGaCCGCGUGUa -5'
22937 3' -51.8 NC_005137.2 + 44099 0.66 0.946245
Target:  5'- -----cGCUAUcGCUGCUGGUGCugGa -3'
miRNA:   3'- aauuuuUGGUA-CGGCGACCGCGugUa -5'
22937 3' -51.8 NC_005137.2 + 63783 0.67 0.94141
Target:  5'- ----cGACCGUcGCCGCggcGGCGUugAa -3'
miRNA:   3'- aauuuUUGGUA-CGGCGa--CCGCGugUa -5'
22937 3' -51.8 NC_005137.2 + 43940 0.67 0.93092
Target:  5'- cUGAAAGUCGgcaaacCCGCUGGCGCGCu- -3'
miRNA:   3'- aAUUUUUGGUac----GGCGACCGCGUGua -5'
22937 3' -51.8 NC_005137.2 + 18225 0.67 0.925261
Target:  5'- --cAAGGCgGUGuuGCUGuGUGCGCGUc -3'
miRNA:   3'- aauUUUUGgUACggCGAC-CGCGUGUA- -5'
22937 3' -51.8 NC_005137.2 + 118783 0.68 0.913115
Target:  5'- aUAGucAUCAUcGUCGCUGGUGCGCc- -3'
miRNA:   3'- aAUUuuUGGUA-CGGCGACCGCGUGua -5'
22937 3' -51.8 NC_005137.2 + 20941 0.68 0.912479
Target:  5'- -aAAAAACCGcgacgacugcgucUGCUGCcugcGGCGCGCGUu -3'
miRNA:   3'- aaUUUUUGGU-------------ACGGCGa---CCGCGUGUA- -5'
22937 3' -51.8 NC_005137.2 + 47232 0.68 0.90663
Target:  5'- cUGAAGACUgcGCCGCUgcGGuCGUACAa -3'
miRNA:   3'- aAUUUUUGGuaCGGCGA--CC-GCGUGUa -5'
22937 3' -51.8 NC_005137.2 + 39266 0.68 0.899875
Target:  5'- gUUGGuuACCAcGUaauCGCUGGCGUACAc -3'
miRNA:   3'- -AAUUuuUGGUaCG---GCGACCGCGUGUa -5'
22937 3' -51.8 NC_005137.2 + 75244 0.68 0.899875
Target:  5'- aUGAugGCCGUGaCCGCgGGCGCu--- -3'
miRNA:   3'- aAUUuuUGGUAC-GGCGaCCGCGugua -5'
22937 3' -51.8 NC_005137.2 + 100071 0.68 0.892851
Target:  5'- -----uGCUuuGUGCCGC-GGCGCGCGg -3'
miRNA:   3'- aauuuuUGG--UACGGCGaCCGCGUGUa -5'
22937 3' -51.8 NC_005137.2 + 93426 0.69 0.878016
Target:  5'- -cAAAAACCG-GCgGCUGGC-CGCAg -3'
miRNA:   3'- aaUUUUUGGUaCGgCGACCGcGUGUa -5'
22937 3' -51.8 NC_005137.2 + 90911 0.69 0.878016
Target:  5'- --cGGAugCAUugGCCGUgUGGCGCGCAa -3'
miRNA:   3'- aauUUUugGUA--CGGCG-ACCGCGUGUa -5'
22937 3' -51.8 NC_005137.2 + 78774 0.69 0.870216
Target:  5'- aUAAAGgacACCAUuucGUCGCcGGCGCGCGUu -3'
miRNA:   3'- aAUUUU---UGGUA---CGGCGaCCGCGUGUA- -5'
22937 3' -51.8 NC_005137.2 + 114824 0.69 0.853882
Target:  5'- -cAGAugUCAUagGCgGCUGGCGCACGa -3'
miRNA:   3'- aaUUUuuGGUA--CGgCGACCGCGUGUa -5'
22937 3' -51.8 NC_005137.2 + 1972 0.69 0.853882
Target:  5'- --uGGAACCcUGCCGCaGGCGUaaGCAg -3'
miRNA:   3'- aauUUUUGGuACGGCGaCCGCG--UGUa -5'
22937 3' -51.8 NC_005137.2 + 30952 0.69 0.845363
Target:  5'- -------aCGUGuuGCUGGUGCGCGUc -3'
miRNA:   3'- aauuuuugGUACggCGACCGCGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.