Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 46426 | 1.04 | 0.008541 |
Target: 5'- uUUAAAAACCAUGCCGCUGGCGCACAUg -3' miRNA: 3'- -AAUUUUUGGUACGGCGACCGCGUGUA- -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 2637 | 0.75 | 0.543528 |
Target: 5'- -----cACCAUGCCGCacgcGGCGCAUAa -3' miRNA: 3'- aauuuuUGGUACGGCGa---CCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 100138 | 0.72 | 0.696374 |
Target: 5'- ---uGGugCGUgcGCUGCUGGCGCACGa -3' miRNA: 3'- aauuUUugGUA--CGGCGACCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 110911 | 0.72 | 0.702857 |
Target: 5'- gUAAuuGGACCGUGCCGUacaccgaucgcccGGCGCACAa -3' miRNA: 3'- aAUU--UUUGGUACGGCGa------------CCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 6866 | 0.71 | 0.769962 |
Target: 5'- -------aCGUGUCGCUGGgGCACAg -3' miRNA: 3'- aauuuuugGUACGGCGACCgCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 74287 | 0.71 | 0.779997 |
Target: 5'- uUUAAAugcAACCGUGCCGUgccGGCGCGa-- -3' miRNA: 3'- -AAUUU---UUGGUACGGCGa--CCGCGUgua -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 97264 | 0.7 | 0.799599 |
Target: 5'- -------aCAUGUCGUUGGCGUACAg -3' miRNA: 3'- aauuuuugGUACGGCGACCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 79145 | 0.7 | 0.818501 |
Target: 5'- -cGGAAuuuCCGUGCCGCUGGUaacGUACu- -3' miRNA: 3'- aaUUUUu--GGUACGGCGACCG---CGUGua -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 108273 | 0.7 | 0.818501 |
Target: 5'- -gGGAuGCgGUGCUGCgaucGGCGCGCAa -3' miRNA: 3'- aaUUUuUGgUACGGCGa---CCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 30952 | 0.69 | 0.845363 |
Target: 5'- -------aCGUGuuGCUGGUGCGCGUc -3' miRNA: 3'- aauuuuugGUACggCGACCGCGUGUA- -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 1972 | 0.69 | 0.853882 |
Target: 5'- --uGGAACCcUGCCGCaGGCGUaaGCAg -3' miRNA: 3'- aauUUUUGGuACGGCGaCCGCG--UGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 114824 | 0.69 | 0.853882 |
Target: 5'- -cAGAugUCAUagGCgGCUGGCGCACGa -3' miRNA: 3'- aaUUUuuGGUA--CGgCGACCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 78774 | 0.69 | 0.870216 |
Target: 5'- aUAAAGgacACCAUuucGUCGCcGGCGCGCGUu -3' miRNA: 3'- aAUUUU---UGGUA---CGGCGaCCGCGUGUA- -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 93426 | 0.69 | 0.878016 |
Target: 5'- -cAAAAACCG-GCgGCUGGC-CGCAg -3' miRNA: 3'- aaUUUUUGGUaCGgCGACCGcGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 90911 | 0.69 | 0.878016 |
Target: 5'- --cGGAugCAUugGCCGUgUGGCGCGCAa -3' miRNA: 3'- aauUUUugGUA--CGGCG-ACCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 100071 | 0.68 | 0.892851 |
Target: 5'- -----uGCUuuGUGCCGC-GGCGCGCGg -3' miRNA: 3'- aauuuuUGG--UACGGCGaCCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 39266 | 0.68 | 0.899875 |
Target: 5'- gUUGGuuACCAcGUaauCGCUGGCGUACAc -3' miRNA: 3'- -AAUUuuUGGUaCG---GCGACCGCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 75244 | 0.68 | 0.899875 |
Target: 5'- aUGAugGCCGUGaCCGCgGGCGCu--- -3' miRNA: 3'- aAUUuuUGGUAC-GGCGaCCGCGugua -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 47232 | 0.68 | 0.90663 |
Target: 5'- cUGAAGACUgcGCCGCUgcGGuCGUACAa -3' miRNA: 3'- aAUUUUUGGuaCGGCGA--CC-GCGUGUa -5' |
|||||||
22937 | 3' | -51.8 | NC_005137.2 | + | 20941 | 0.68 | 0.912479 |
Target: 5'- -aAAAAACCGcgacgacugcgucUGCUGCcugcGGCGCGCGUu -3' miRNA: 3'- aaUUUUUGGU-------------ACGGCGa---CCGCGUGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home