miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22937 5' -46.9 NC_005137.2 + 11135 0.66 0.999809
Target:  5'- gACGgcgGUuaGCGCCGAUGcCGAAUUUUg- -3'
miRNA:   3'- -UGUa--CG--UGCGGCUGCaGUUUAAAAga -5'
22937 5' -46.9 NC_005137.2 + 97263 0.66 0.999809
Target:  5'- aACAUGU-CGuuGGCGUaCAGcUUUUCUa -3'
miRNA:   3'- -UGUACGuGCggCUGCA-GUUuAAAAGA- -5'
22937 5' -46.9 NC_005137.2 + 22408 0.66 0.999754
Target:  5'- aACAUgGCGCGCCuGACGcugCGGAgcgUCa -3'
miRNA:   3'- -UGUA-CGUGCGG-CUGCa--GUUUaaaAGa -5'
22937 5' -46.9 NC_005137.2 + 46585 0.66 0.999685
Target:  5'- aGCAUGUGCGCCaGCGgcauGGUUUUUa -3'
miRNA:   3'- -UGUACGUGCGGcUGCagu-UUAAAAGa -5'
22937 5' -46.9 NC_005137.2 + 41263 0.66 0.999685
Target:  5'- uCGUGCACGUCGGC--CAAAUUUcCUu -3'
miRNA:   3'- uGUACGUGCGGCUGcaGUUUAAAaGA- -5'
22937 5' -46.9 NC_005137.2 + 90772 0.66 0.999685
Target:  5'- -aAUGCAU-CCGACGUgGAAUauuUUUCUg -3'
miRNA:   3'- ugUACGUGcGGCUGCAgUUUA---AAAGA- -5'
22937 5' -46.9 NC_005137.2 + 79859 0.66 0.999601
Target:  5'- cACAUGCGCagcaGCUGugGcCAAAUUUcCa -3'
miRNA:   3'- -UGUACGUG----CGGCugCaGUUUAAAaGa -5'
22937 5' -46.9 NC_005137.2 + 9680 0.66 0.999496
Target:  5'- aGCAUGuCACGCUGuuCGUCAAcgUg--- -3'
miRNA:   3'- -UGUAC-GUGCGGCu-GCAGUUuaAaaga -5'
22937 5' -46.9 NC_005137.2 + 100189 0.66 0.999496
Target:  5'- ---cGCGCGCCG-CGUCGGAc----- -3'
miRNA:   3'- uguaCGUGCGGCuGCAGUUUaaaaga -5'
22937 5' -46.9 NC_005137.2 + 78614 0.67 0.999369
Target:  5'- ---cGCGCGCCGGCGaCGAAa----- -3'
miRNA:   3'- uguaCGUGCGGCUGCaGUUUaaaaga -5'
22937 5' -46.9 NC_005137.2 + 100157 0.67 0.999215
Target:  5'- uACggGCGCGCCGGguCGUCAGcUUUg-- -3'
miRNA:   3'- -UGuaCGUGCGGCU--GCAGUUuAAAaga -5'
22937 5' -46.9 NC_005137.2 + 64357 0.67 0.99903
Target:  5'- cACAUGCACaCCGACGaCAcAUUUg-- -3'
miRNA:   3'- -UGUACGUGcGGCUGCaGUuUAAAaga -5'
22937 5' -46.9 NC_005137.2 + 96296 0.67 0.99903
Target:  5'- cGCGUGCauucgccgacACGCCGGCGcgCAAGUg---- -3'
miRNA:   3'- -UGUACG----------UGCGGCUGCa-GUUUAaaaga -5'
22937 5' -46.9 NC_005137.2 + 88100 0.68 0.998234
Target:  5'- gGCAUGCACGgCGACGcCGu------- -3'
miRNA:   3'- -UGUACGUGCgGCUGCaGUuuaaaaga -5'
22937 5' -46.9 NC_005137.2 + 99516 0.68 0.998234
Target:  5'- uGCG-GCugGCCG-CG-CAAGUUUUCc -3'
miRNA:   3'- -UGUaCGugCGGCuGCaGUUUAAAAGa -5'
22937 5' -46.9 NC_005137.2 + 64862 0.68 0.99783
Target:  5'- ---gGCcuacgGCGCCGACGUCAcgcgcuagcagcaGAUUUUCc -3'
miRNA:   3'- uguaCG-----UGCGGCUGCAGU-------------UUAAAAGa -5'
22937 5' -46.9 NC_005137.2 + 5206 0.68 0.996949
Target:  5'- ---cGCACGCaCGACGUCucGUUUg-- -3'
miRNA:   3'- uguaCGUGCG-GCUGCAGuuUAAAaga -5'
22937 5' -46.9 NC_005137.2 + 109426 0.69 0.996377
Target:  5'- aACAaGUACGUCGACGUUAAAg----- -3'
miRNA:   3'- -UGUaCGUGCGGCUGCAGUUUaaaaga -5'
22937 5' -46.9 NC_005137.2 + 115758 0.69 0.993743
Target:  5'- aACGUGCGCGCgCGGCGUUuucccugCUu -3'
miRNA:   3'- -UGUACGUGCG-GCUGCAGuuuaaaaGA- -5'
22937 5' -46.9 NC_005137.2 + 56945 0.7 0.992058
Target:  5'- cACAaGCG-GCCGGCGaUCAAGUUUUUg -3'
miRNA:   3'- -UGUaCGUgCGGCUGC-AGUUUAAAAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.