miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22938 5' -57.9 NC_005137.2 + 128818 0.66 0.821003
Target:  5'- cGUCGUUGuGAacguauccUGUGGCGuuGUGCAGg -3'
miRNA:   3'- cUAGCAAC-CU--------GCGCCGCggCGUGUCg -5'
22938 5' -57.9 NC_005137.2 + 16583 0.66 0.821003
Target:  5'- --gUGUuaUGGAUGUGcGCGCauugaUGCGCGGCg -3'
miRNA:   3'- cuaGCA--ACCUGCGC-CGCG-----GCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 100040 0.66 0.821003
Target:  5'- cGGUCc---GACGCGGCGCgcggCGCGuuCAGCa -3'
miRNA:   3'- -CUAGcaacCUGCGCCGCG----GCGU--GUCG- -5'
22938 5' -57.9 NC_005137.2 + 106578 0.66 0.821003
Target:  5'- --aUGgUGGACauuuaCGGCGCCGCGguGUu -3'
miRNA:   3'- cuaGCaACCUGc----GCCGCGGCGUguCG- -5'
22938 5' -57.9 NC_005137.2 + 24473 0.66 0.821003
Target:  5'- uGUUGUgugcgcGGACGCGGUggacugcaacaaGCCGUcuguCAGCg -3'
miRNA:   3'- cUAGCAa-----CCUGCGCCG------------CGGCGu---GUCG- -5'
22938 5' -57.9 NC_005137.2 + 45676 0.66 0.812392
Target:  5'- --aCG-UGGGCgGCGGCGCCaaCGCGGa -3'
miRNA:   3'- cuaGCaACCUG-CGCCGCGGc-GUGUCg -5'
22938 5' -57.9 NC_005137.2 + 70694 0.66 0.812392
Target:  5'- -uUCGgcGGugGCGcUGCCGaguuaACGGCu -3'
miRNA:   3'- cuAGCaaCCugCGCcGCGGCg----UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 100247 0.66 0.80362
Target:  5'- cGAUCc--GGGCGCcgcaacgcacgGGCGCgCGuCGCGGCa -3'
miRNA:   3'- -CUAGcaaCCUGCG-----------CCGCG-GC-GUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 95831 0.66 0.792891
Target:  5'- aGUCGUUaaggccaGGAUGauccaGGCGCacuugcccgucggCGCACGGCg -3'
miRNA:   3'- cUAGCAA-------CCUGCg----CCGCG-------------GCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 125206 0.66 0.785622
Target:  5'- aGAUCc---GGCGCcGCGCCGCcCGGCu -3'
miRNA:   3'- -CUAGcaacCUGCGcCGCGGCGuGUCG- -5'
22938 5' -57.9 NC_005137.2 + 33236 0.66 0.785622
Target:  5'- uGUCGUUGGGCGUGucaaguacuUGCUGCACAa- -3'
miRNA:   3'- cUAGCAACCUGCGCc--------GCGGCGUGUcg -5'
22938 5' -57.9 NC_005137.2 + 100151 0.67 0.776414
Target:  5'- ---aGUUGGugGCGGUuggugcgugcGCUGCugGcGCa -3'
miRNA:   3'- cuagCAACCugCGCCG----------CGGCGugU-CG- -5'
22938 5' -57.9 NC_005137.2 + 99608 0.67 0.767078
Target:  5'- -uUUGUUGcaaACGC-GCGCCGCGCcaAGCa -3'
miRNA:   3'- cuAGCAACc--UGCGcCGCGGCGUG--UCG- -5'
22938 5' -57.9 NC_005137.2 + 130855 0.67 0.767078
Target:  5'- --gCGUUGGACGCGcaGC-CCGCGCc-- -3'
miRNA:   3'- cuaGCAACCUGCGC--CGcGGCGUGucg -5'
22938 5' -57.9 NC_005137.2 + 19991 0.67 0.757623
Target:  5'- cGggCGgcGGAggcuuuguguCGCGGCGuuGCuugGCGGCa -3'
miRNA:   3'- -CuaGCaaCCU----------GCGCCGCggCG---UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 17473 0.67 0.757623
Target:  5'- uAUC--UGcGACGCGcaCGUCGCACAGCg -3'
miRNA:   3'- cUAGcaAC-CUGCGCc-GCGGCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 108102 0.67 0.757623
Target:  5'- aGUUG-UGGuACGCGuugcGCGCCGauCGCAGCa -3'
miRNA:   3'- cUAGCaACC-UGCGC----CGCGGC--GUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 56236 0.67 0.748058
Target:  5'- --gCGUUuuggGGACGUGaUGCCGCACcGCg -3'
miRNA:   3'- cuaGCAA----CCUGCGCcGCGGCGUGuCG- -5'
22938 5' -57.9 NC_005137.2 + 27294 0.67 0.747096
Target:  5'- -uUCGUUgcuccaccugaacGGugGCGGCGgCGUuuuggGCAGUg -3'
miRNA:   3'- cuAGCAA-------------CCugCGCCGCgGCG-----UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 7002 0.67 0.738393
Target:  5'- cGGUCGccgGGcacaACGUGGCGCaCGCGCgucacGGCc -3'
miRNA:   3'- -CUAGCaa-CC----UGCGCCGCG-GCGUG-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.