miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22938 5' -57.9 NC_005137.2 + 48771 1.12 0.00103
Target:  5'- cGAUCGUUGGACGCGGCGCCGCACAGCg -3'
miRNA:   3'- -CUAGCAACCUGCGCCGCGGCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 75959 0.78 0.203315
Target:  5'- -uUCGUUGucguGACGCGGCGCgcguuggUGCACGGCg -3'
miRNA:   3'- cuAGCAAC----CUGCGCCGCG-------GCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 16929 0.75 0.298808
Target:  5'- aGcgUGUUGGcaaACGCGGUGCCGU-CAGCa -3'
miRNA:   3'- -CuaGCAACC---UGCGCCGCGGCGuGUCG- -5'
22938 5' -57.9 NC_005137.2 + 112449 0.75 0.312125
Target:  5'- --cCGUUGGACGCGGCGgCaggauggGCgACGGCg -3'
miRNA:   3'- cuaGCAACCUGCGCCGCgG-------CG-UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 18413 0.75 0.334809
Target:  5'- --cCGUguuaacGGACGCGGCGCCGCAg--- -3'
miRNA:   3'- cuaGCAa-----CCUGCGCCGCGGCGUgucg -5'
22938 5' -57.9 NC_005137.2 + 24395 0.74 0.350072
Target:  5'- --cUGUUGGACGCGGCgucagGCCGCcguuucaaauugAUAGCa -3'
miRNA:   3'- cuaGCAACCUGCGCCG-----CGGCG------------UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 96572 0.74 0.350072
Target:  5'- --gCGgcGGGCGCGuCGCCGCGCGGg -3'
miRNA:   3'- cuaGCaaCCUGCGCcGCGGCGUGUCg -5'
22938 5' -57.9 NC_005137.2 + 11319 0.74 0.382059
Target:  5'- -uUCGUUGGgaucggGCGUGGUgGCaCGCGCAGCc -3'
miRNA:   3'- cuAGCAACC------UGCGCCG-CG-GCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 125022 0.73 0.407293
Target:  5'- cGAUCgGUUGcGGCGUGGCgcaggcaacggaGCCGgGCGGCg -3'
miRNA:   3'- -CUAG-CAAC-CUGCGCCG------------CGGCgUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 123496 0.73 0.433545
Target:  5'- -uUCGUcGGGCGCGGU-UgGCGCAGCg -3'
miRNA:   3'- cuAGCAaCCUGCGCCGcGgCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 1672 0.72 0.439811
Target:  5'- -----aUGGccgaauugaacaacGCGuCGGCGCCGCGCGGCg -3'
miRNA:   3'- cuagcaACC--------------UGC-GCCGCGGCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 88487 0.72 0.488842
Target:  5'- cGUCGcgcaaUUGGACGgaaUGuCGCCGCGCAGCa -3'
miRNA:   3'- cUAGC-----AACCUGC---GCcGCGGCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 72470 0.71 0.508006
Target:  5'- --gCGUUcGGACaGUGGCGCCGCguuGGCg -3'
miRNA:   3'- cuaGCAA-CCUG-CGCCGCGGCGug-UCG- -5'
22938 5' -57.9 NC_005137.2 + 108279 0.71 0.508006
Target:  5'- --aCGaccgGGAUGCGGUGCUGCGauCGGCg -3'
miRNA:   3'- cuaGCaa--CCUGCGCCGCGGCGU--GUCG- -5'
22938 5' -57.9 NC_005137.2 + 99236 0.71 0.52748
Target:  5'- uGAUUGUuuUGGGCGC-GCGCCccguugccacggGCACAGUu -3'
miRNA:   3'- -CUAGCA--ACCUGCGcCGCGG------------CGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 108143 0.7 0.567199
Target:  5'- cGGUCGUcGGGCgGCGGCGgCGU-CGGUa -3'
miRNA:   3'- -CUAGCAaCCUG-CGCCGCgGCGuGUCG- -5'
22938 5' -57.9 NC_005137.2 + 95484 0.7 0.567199
Target:  5'- ---gGUcGGAUGC-GCGCCGCACGGg -3'
miRNA:   3'- cuagCAaCCUGCGcCGCGGCGUGUCg -5'
22938 5' -57.9 NC_005137.2 + 115248 0.69 0.615772
Target:  5'- aGGUCGacgaacacaugGcGACGCuGGCGCCGCgaccuuggcgaGCAGCg -3'
miRNA:   3'- -CUAGCaa---------C-CUGCG-CCGCGGCG-----------UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 39814 0.69 0.617807
Target:  5'- ------cGGAaagUGCGGCGCCGCuuagccugGCAGCa -3'
miRNA:   3'- cuagcaaCCU---GCGCCGCGGCG--------UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 46640 0.69 0.617807
Target:  5'- --aUGgUGGACaGCGGCGCUaaGgGCAGCg -3'
miRNA:   3'- cuaGCaACCUG-CGCCGCGG--CgUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.