miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22938 5' -57.9 NC_005137.2 + 1672 0.72 0.439811
Target:  5'- -----aUGGccgaauugaacaacGCGuCGGCGCCGCGCGGCg -3'
miRNA:   3'- cuagcaACC--------------UGC-GCCGCGGCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 2597 0.69 0.62799
Target:  5'- uGGUCGUcGGGCGCGG-GCaCGU-CGGCc -3'
miRNA:   3'- -CUAGCAaCCUGCGCCgCG-GCGuGUCG- -5'
22938 5' -57.9 NC_005137.2 + 7002 0.67 0.738393
Target:  5'- cGGUCGccgGGcacaACGUGGCGCaCGCGCgucacGGCc -3'
miRNA:   3'- -CUAGCaa-CC----UGCGCCGCG-GCGUG-----UCG- -5'
22938 5' -57.9 NC_005137.2 + 11319 0.74 0.382059
Target:  5'- -uUCGUUGGgaucggGCGUGGUgGCaCGCGCAGCc -3'
miRNA:   3'- cuAGCAACC------UGCGCCG-CG-GCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 16583 0.66 0.821003
Target:  5'- --gUGUuaUGGAUGUGcGCGCauugaUGCGCGGCg -3'
miRNA:   3'- cuaGCA--ACCUGCGC-CGCG-----GCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 16929 0.75 0.298808
Target:  5'- aGcgUGUUGGcaaACGCGGUGCCGU-CAGCa -3'
miRNA:   3'- -CuaGCAACC---UGCGCCGCGGCGuGUCG- -5'
22938 5' -57.9 NC_005137.2 + 17473 0.67 0.757623
Target:  5'- uAUC--UGcGACGCGcaCGUCGCACAGCg -3'
miRNA:   3'- cUAGcaAC-CUGCGCc-GCGGCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 18413 0.75 0.334809
Target:  5'- --cCGUguuaacGGACGCGGCGCCGCAg--- -3'
miRNA:   3'- cuaGCAa-----CCUGCGCCGCGGCGUgucg -5'
22938 5' -57.9 NC_005137.2 + 19991 0.67 0.757623
Target:  5'- cGggCGgcGGAggcuuuguguCGCGGCGuuGCuugGCGGCa -3'
miRNA:   3'- -CuaGCaaCCU----------GCGCCGCggCG---UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 24395 0.74 0.350072
Target:  5'- --cUGUUGGACGCGGCgucagGCCGCcguuucaaauugAUAGCa -3'
miRNA:   3'- cuaGCAACCUGCGCCG-----CGGCG------------UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 24473 0.66 0.821003
Target:  5'- uGUUGUgugcgcGGACGCGGUggacugcaacaaGCCGUcuguCAGCg -3'
miRNA:   3'- cUAGCAa-----CCUGCGCCG------------CGGCGu---GUCG- -5'
22938 5' -57.9 NC_005137.2 + 25192 0.68 0.706891
Target:  5'- cAUUGUUGGACGaagaauuuuuuaGGCaGCUGuUACAGCg -3'
miRNA:   3'- cUAGCAACCUGCg-----------CCG-CGGC-GUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 27294 0.67 0.747096
Target:  5'- -uUCGUUgcuccaccugaacGGugGCGGCGgCGUuuuggGCAGUg -3'
miRNA:   3'- cuAGCAA-------------CCugCGCCGCgGCG-----UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 27886 0.68 0.708882
Target:  5'- cGAUCGc--GugGCGGCGCCacgggucaucGCcCGGCa -3'
miRNA:   3'- -CUAGCaacCugCGCCGCGG----------CGuGUCG- -5'
22938 5' -57.9 NC_005137.2 + 33236 0.66 0.785622
Target:  5'- uGUCGUUGGGCGUGucaaguacuUGCUGCACAa- -3'
miRNA:   3'- cUAGCAACCUGCGCc--------GCGGCGUGUcg -5'
22938 5' -57.9 NC_005137.2 + 39814 0.69 0.617807
Target:  5'- ------cGGAaagUGCGGCGCCGCuuagccugGCAGCa -3'
miRNA:   3'- cuagcaaCCU---GCGCCGCGGCG--------UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 45676 0.66 0.812392
Target:  5'- --aCG-UGGGCgGCGGCGCCaaCGCGGa -3'
miRNA:   3'- cuaGCaACCUG-CGCCGCGGc-GUGUCg -5'
22938 5' -57.9 NC_005137.2 + 46640 0.69 0.617807
Target:  5'- --aUGgUGGACaGCGGCGCUaaGgGCAGCg -3'
miRNA:   3'- cuaGCaACCUG-CGCCGCGG--CgUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 48771 1.12 0.00103
Target:  5'- cGAUCGUUGGACGCGGCGCCGCACAGCg -3'
miRNA:   3'- -CUAGCAACCUGCGCCGCGGCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 55579 0.69 0.658525
Target:  5'- --aUGgcGGACgcggGCGGCGCCGUGC-GCg -3'
miRNA:   3'- cuaGCaaCCUG----CGCCGCGGCGUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.