miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22938 5' -57.9 NC_005137.2 + 130855 0.67 0.767078
Target:  5'- --gCGUUGGACGCGcaGC-CCGCGCc-- -3'
miRNA:   3'- cuaGCAACCUGCGC--CGcGGCGUGucg -5'
22938 5' -57.9 NC_005137.2 + 62998 0.69 0.64734
Target:  5'- -uUCGgcGGACccaugguGCGGCGCCgGCGuguCGGCa -3'
miRNA:   3'- cuAGCaaCCUG-------CGCCGCGG-CGU---GUCG- -5'
22938 5' -57.9 NC_005137.2 + 124942 0.68 0.668673
Target:  5'- uGAUCGccgGGuugcgaugaACGCGGCGCCggugaugggGCGCuGCg -3'
miRNA:   3'- -CUAGCaa-CC---------UGCGCCGCGG---------CGUGuCG- -5'
22938 5' -57.9 NC_005137.2 + 27886 0.68 0.708882
Target:  5'- cGAUCGc--GugGCGGCGCCacgggucaucGCcCGGCa -3'
miRNA:   3'- -CUAGCaacCugCGCCGCGG----------CGuGUCG- -5'
22938 5' -57.9 NC_005137.2 + 123200 0.68 0.708882
Target:  5'- cGUCGUU---UGUGGCGUCGUugAGCg -3'
miRNA:   3'- cUAGCAAccuGCGCCGCGGCGugUCG- -5'
22938 5' -57.9 NC_005137.2 + 7002 0.67 0.738393
Target:  5'- cGGUCGccgGGcacaACGUGGCGCaCGCGCgucacGGCc -3'
miRNA:   3'- -CUAGCaa-CC----UGCGCCGCG-GCGUG-----UCG- -5'
22938 5' -57.9 NC_005137.2 + 27294 0.67 0.747096
Target:  5'- -uUCGUUgcuccaccugaacGGugGCGGCGgCGUuuuggGCAGUg -3'
miRNA:   3'- cuAGCAA-------------CCugCGCCGCgGCG-----UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 56236 0.67 0.748058
Target:  5'- --gCGUUuuggGGACGUGaUGCCGCACcGCg -3'
miRNA:   3'- cuaGCAA----CCUGCGCcGCGGCGUGuCG- -5'
22938 5' -57.9 NC_005137.2 + 108102 0.67 0.757623
Target:  5'- aGUUG-UGGuACGCGuugcGCGCCGauCGCAGCa -3'
miRNA:   3'- cUAGCaACC-UGCGC----CGCGGC--GUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 56522 0.69 0.638176
Target:  5'- --aCGUUGGcCGCaaacGCGCCGUACAaacGCa -3'
miRNA:   3'- cuaGCAACCuGCGc---CGCGGCGUGU---CG- -5'
22938 5' -57.9 NC_005137.2 + 46640 0.69 0.617807
Target:  5'- --aUGgUGGACaGCGGCGCUaaGgGCAGCg -3'
miRNA:   3'- cuaGCaACCUG-CGCCGCGG--CgUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 115248 0.69 0.615772
Target:  5'- aGGUCGacgaacacaugGcGACGCuGGCGCCGCgaccuuggcgaGCAGCg -3'
miRNA:   3'- -CUAGCaa---------C-CUGCG-CCGCGGCG-----------UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 75959 0.78 0.203315
Target:  5'- -uUCGUUGucguGACGCGGCGCgcguuggUGCACGGCg -3'
miRNA:   3'- cuAGCAAC----CUGCGCCGCG-------GCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 112449 0.75 0.312125
Target:  5'- --cCGUUGGACGCGGCGgCaggauggGCgACGGCg -3'
miRNA:   3'- cuaGCAACCUGCGCCGCgG-------CG-UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 24395 0.74 0.350072
Target:  5'- --cUGUUGGACGCGGCgucagGCCGCcguuucaaauugAUAGCa -3'
miRNA:   3'- cuaGCAACCUGCGCCG-----CGGCG------------UGUCG- -5'
22938 5' -57.9 NC_005137.2 + 125022 0.73 0.407293
Target:  5'- cGAUCgGUUGcGGCGUGGCgcaggcaacggaGCCGgGCGGCg -3'
miRNA:   3'- -CUAG-CAAC-CUGCGCCG------------CGGCgUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 88487 0.72 0.488842
Target:  5'- cGUCGcgcaaUUGGACGgaaUGuCGCCGCGCAGCa -3'
miRNA:   3'- cUAGC-----AACCUGC---GCcGCGGCGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 99236 0.71 0.52748
Target:  5'- uGAUUGUuuUGGGCGC-GCGCCccguugccacggGCACAGUu -3'
miRNA:   3'- -CUAGCA--ACCUGCGcCGCGG------------CGUGUCG- -5'
22938 5' -57.9 NC_005137.2 + 95484 0.7 0.567199
Target:  5'- ---gGUcGGAUGC-GCGCCGCACGGg -3'
miRNA:   3'- cuagCAaCCUGCGcCGCGGCGUGUCg -5'
22938 5' -57.9 NC_005137.2 + 108143 0.7 0.567199
Target:  5'- cGGUCGUcGGGCgGCGGCGgCGU-CGGUa -3'
miRNA:   3'- -CUAGCAaCCUG-CGCCGCgGCGuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.