miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22939 3' -55.5 NC_005137.2 + 100106 0.66 0.915414
Target:  5'- cGCgGCCgCGGCCGuuGUccaacaugCGugCGCg -3'
miRNA:   3'- -CGgCGGaGUCGGUggCAaa------GUugGCG- -5'
22939 3' -55.5 NC_005137.2 + 31405 0.66 0.915414
Target:  5'- -gCGCgUCA-CCaACCGUggCAGCUGCa -3'
miRNA:   3'- cgGCGgAGUcGG-UGGCAaaGUUGGCG- -5'
22939 3' -55.5 NC_005137.2 + 33918 0.66 0.909435
Target:  5'- cGCCGCCgcgCacaauGGCCAUgCGuUUUCGguacaacgccGCCGCa -3'
miRNA:   3'- -CGGCGGa--G-----UCGGUG-GC-AAAGU----------UGGCG- -5'
22939 3' -55.5 NC_005137.2 + 66322 0.66 0.909435
Target:  5'- uGCCGCCcCAGCCgauGCgCGUacCAAUUGUg -3'
miRNA:   3'- -CGGCGGaGUCGG---UG-GCAaaGUUGGCG- -5'
22939 3' -55.5 NC_005137.2 + 66860 0.66 0.903216
Target:  5'- -gCGCUUaCAGCCAgCGUUUUuaAAgCGCg -3'
miRNA:   3'- cgGCGGA-GUCGGUgGCAAAG--UUgGCG- -5'
22939 3' -55.5 NC_005137.2 + 111812 0.66 0.903216
Target:  5'- -aCGUUUCAGUCGCUGUUcCAcCUGCu -3'
miRNA:   3'- cgGCGGAGUCGGUGGCAAaGUuGGCG- -5'
22939 3' -55.5 NC_005137.2 + 48477 0.66 0.903216
Target:  5'- uGCCGCCaaGGCCguGCgCGac-CAGCUGCg -3'
miRNA:   3'- -CGGCGGagUCGG--UG-GCaaaGUUGGCG- -5'
22939 3' -55.5 NC_005137.2 + 14311 0.66 0.903216
Target:  5'- uGCUGCugCUC-GUCGCCGUUgCuuCCGCu -3'
miRNA:   3'- -CGGCG--GAGuCGGUGGCAAaGuuGGCG- -5'
22939 3' -55.5 NC_005137.2 + 56130 0.66 0.89676
Target:  5'- aGCCGCgCUCAauagacCCGuCCGacgcagCGACCGCa -3'
miRNA:   3'- -CGGCG-GAGUc-----GGU-GGCaaa---GUUGGCG- -5'
22939 3' -55.5 NC_005137.2 + 99166 0.66 0.89676
Target:  5'- aGUCGuCCUCGGCC-CgGUgacccUCAacguuGCCGCc -3'
miRNA:   3'- -CGGC-GGAGUCGGuGgCAa----AGU-----UGGCG- -5'
22939 3' -55.5 NC_005137.2 + 117734 0.66 0.89676
Target:  5'- cGUCGCCcgUCAGCCGCac---CGGCgGCg -3'
miRNA:   3'- -CGGCGG--AGUCGGUGgcaaaGUUGgCG- -5'
22939 3' -55.5 NC_005137.2 + 100185 0.66 0.890069
Target:  5'- cGCCGCgUCGGaCCGC-GUgcuugCGcACCGCu -3'
miRNA:   3'- -CGGCGgAGUC-GGUGgCAaa---GU-UGGCG- -5'
22939 3' -55.5 NC_005137.2 + 130704 0.66 0.890069
Target:  5'- aCCGCUccgaaUCuauGCCGCCGcggCGGCUGCc -3'
miRNA:   3'- cGGCGG-----AGu--CGGUGGCaaaGUUGGCG- -5'
22939 3' -55.5 NC_005137.2 + 33242 0.66 0.890069
Target:  5'- cGCCGCCgac-UCACCGU----ACCGCg -3'
miRNA:   3'- -CGGCGGagucGGUGGCAaaguUGGCG- -5'
22939 3' -55.5 NC_005137.2 + 3691 0.66 0.889388
Target:  5'- aGCCGCCaacCGGUgcgUugCGUUguuccaaUCGACCGUg -3'
miRNA:   3'- -CGGCGGa--GUCG---GugGCAA-------AGUUGGCG- -5'
22939 3' -55.5 NC_005137.2 + 75686 0.67 0.876002
Target:  5'- cGCCGCC--GGUCaaGCUGUUugUCAACgGCa -3'
miRNA:   3'- -CGGCGGagUCGG--UGGCAA--AGUUGgCG- -5'
22939 3' -55.5 NC_005137.2 + 27455 0.67 0.876002
Target:  5'- cGCCGCC---GCCACCGU-UCAGgUGg -3'
miRNA:   3'- -CGGCGGaguCGGUGGCAaAGUUgGCg -5'
22939 3' -55.5 NC_005137.2 + 107277 0.67 0.876002
Target:  5'- cGCCGCCUUcGUCGCUuGUuaugccUUCGAUgGCa -3'
miRNA:   3'- -CGGCGGAGuCGGUGG-CA------AAGUUGgCG- -5'
22939 3' -55.5 NC_005137.2 + 98009 0.67 0.876002
Target:  5'- cCCGCCaagUGGCCAgCGUgcacgUCGGgCGCu -3'
miRNA:   3'- cGGCGGa--GUCGGUgGCAa----AGUUgGCG- -5'
22939 3' -55.5 NC_005137.2 + 47409 0.67 0.876002
Target:  5'- gGCgGUgaUCAGUUugCGUUUguaCGACCGCa -3'
miRNA:   3'- -CGgCGg-AGUCGGugGCAAA---GUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.