miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22939 5' -55.3 NC_005137.2 + 61534 0.66 0.917566
Target:  5'- gCCGCCAacgccaUCAACucGCCGgCCGCC-CAu -3'
miRNA:   3'- -GGUGGUag----AGUUGu-CGGU-GGCGGaGU- -5'
22939 5' -55.3 NC_005137.2 + 46722 0.66 0.917566
Target:  5'- aCACCGUUUCcACGcgcGCCACCaccaGCCUgAa -3'
miRNA:   3'- gGUGGUAGAGuUGU---CGGUGG----CGGAgU- -5'
22939 5' -55.3 NC_005137.2 + 130533 0.66 0.917566
Target:  5'- aCACg--CUgGGCAGCCGCCGCggCGg -3'
miRNA:   3'- gGUGguaGAgUUGUCGGUGGCGgaGU- -5'
22939 5' -55.3 NC_005137.2 + 3413 0.66 0.917566
Target:  5'- gUACCAcgUUuACGGCCAUCGCCgggCAa -3'
miRNA:   3'- gGUGGUagAGuUGUCGGUGGCGGa--GU- -5'
22939 5' -55.3 NC_005137.2 + 107297 0.66 0.905457
Target:  5'- gUCGgCGUCaccCAACccGCCGCCGCCUUc -3'
miRNA:   3'- -GGUgGUAGa--GUUGu-CGGUGGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 130249 0.66 0.892382
Target:  5'- gCCGCCA----AACGuGCCGCCGCCa-- -3'
miRNA:   3'- -GGUGGUagagUUGU-CGGUGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 112612 0.66 0.892382
Target:  5'- gCGCCGUCgccCAuccuGCCGCCGCgUCc -3'
miRNA:   3'- gGUGGUAGa--GUugu-CGGUGGCGgAGu -5'
22939 5' -55.3 NC_005137.2 + 112581 0.67 0.878367
Target:  5'- cCCACCAgcgaaaagAGCAGCCGCCG-UUCAu -3'
miRNA:   3'- -GGUGGUagag----UUGUCGGUGGCgGAGU- -5'
22939 5' -55.3 NC_005137.2 + 68599 0.67 0.878367
Target:  5'- aCCACUGcCUCAugGGCUgcGCCGaCUCGu -3'
miRNA:   3'- -GGUGGUaGAGUugUCGG--UGGCgGAGU- -5'
22939 5' -55.3 NC_005137.2 + 24353 0.67 0.877642
Target:  5'- gCCAgCAUUgauauuaUCAGCAGUUgaacguCCGCCUCAc -3'
miRNA:   3'- -GGUgGUAG-------AGUUGUCGGu-----GGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 42824 0.67 0.863448
Target:  5'- aUACCAUUUCAACAccGaCCgACCGCCa-- -3'
miRNA:   3'- gGUGGUAGAGUUGU--C-GG-UGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 48227 0.67 0.863448
Target:  5'- aUCACCGUUUCcGuuGCUGCCGCCg-- -3'
miRNA:   3'- -GGUGGUAGAGuUguCGGUGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 39939 0.67 0.855663
Target:  5'- gCCGCCAUUgUCAGCAguguGCCACgUGCCg-- -3'
miRNA:   3'- -GGUGGUAG-AGUUGU----CGGUG-GCGGagu -5'
22939 5' -55.3 NC_005137.2 + 128269 0.68 0.822511
Target:  5'- aCACCAcgCUCuuCaAGCUGCUGCUUCAu -3'
miRNA:   3'- gGUGGUa-GAGuuG-UCGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 95540 0.68 0.822511
Target:  5'- aUC-CCGUCUCcguuucggcaAGCAGCCACaCGCC-CGu -3'
miRNA:   3'- -GGuGGUAGAG----------UUGUCGGUG-GCGGaGU- -5'
22939 5' -55.3 NC_005137.2 + 128198 0.68 0.822511
Target:  5'- aCACCAcgCUCuuCaAGCUGCUGCUUCAu -3'
miRNA:   3'- gGUGGUa-GAGuuG-UCGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 109384 0.68 0.795749
Target:  5'- gCCACCGUCaCAcuGCAGCCugacACCGUCg-- -3'
miRNA:   3'- -GGUGGUAGaGU--UGUCGG----UGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 52490 0.68 0.795749
Target:  5'- aCAUgGgcuUCAACAaCCGCCGCCUCAn -3'
miRNA:   3'- gGUGgUag-AGUUGUcGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 5226 0.69 0.786512
Target:  5'- gCGCCGUCUCAaugucGCGGCgCACgcacgaCGUCUCGu -3'
miRNA:   3'- gGUGGUAGAGU-----UGUCG-GUG------GCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 103733 0.69 0.78558
Target:  5'- uCCACCAUggaguauaccaagUUUggcgGACAGaCCACCaGCCUCAg -3'
miRNA:   3'- -GGUGGUA-------------GAG----UUGUC-GGUGG-CGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.