miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22939 5' -55.3 NC_005137.2 + 52541 1.11 0.002201
Target:  5'- gCCACCAUCUCAACAGCCACCGCCUCAg -3'
miRNA:   3'- -GGUGGUAGAGUUGUCGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 52568 1.11 0.002201
Target:  5'- gCCACCAUCUCAACAGCCACCGCCUCAg -3'
miRNA:   3'- -GGUGGUAGAGUUGUCGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 52616 0.9 0.056668
Target:  5'- gCCACCAcCUCAACAaCCGCCGCCUCAg -3'
miRNA:   3'- -GGUGGUaGAGUUGUcGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 52517 0.79 0.246974
Target:  5'- gCCACCGUUUCAA---CCGCCGCCUCAn -3'
miRNA:   3'- -GGUGGUAGAGUUgucGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 130219 0.79 0.27209
Target:  5'- gCCACCA-CUUAAUguuauGCCACCGCCUCc -3'
miRNA:   3'- -GGUGGUaGAGUUGu----CGGUGGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 17568 0.73 0.522354
Target:  5'- gUCACCGcCUCAACaucauacuggccaAGCCGCCGCUUUg -3'
miRNA:   3'- -GGUGGUaGAGUUG-------------UCGGUGGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 70853 0.72 0.615345
Target:  5'- -aGCCGUuaaCUCGGCAgcGCCACCGCCg-- -3'
miRNA:   3'- ggUGGUA---GAGUUGU--CGGUGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 52595 0.7 0.698081
Target:  5'- gCCACCAUCUCAACAGCC-UCa----- -3'
miRNA:   3'- -GGUGGUAGAGUUGUCGGuGGcggagu -5'
22939 5' -55.3 NC_005137.2 + 181 0.7 0.707247
Target:  5'- cUCGCUGUggaugUUCAugaugggGCAGCCACCGCCUUu -3'
miRNA:   3'- -GGUGGUA-----GAGU-------UGUCGGUGGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 61785 0.7 0.732408
Target:  5'- aCACCAUgUacugcACAGCCagacuaagcuguuugGCCGCCUCGu -3'
miRNA:   3'- gGUGGUAgAgu---UGUCGG---------------UGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 70706 0.69 0.738369
Target:  5'- gCUGCCGagUUAACGGCUugCGCUUCu -3'
miRNA:   3'- -GGUGGUagAGUUGUCGGugGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 7107 0.69 0.767618
Target:  5'- -gACgGUCUUGACAcGaCCACCGCUUCGc -3'
miRNA:   3'- ggUGgUAGAGUUGU-C-GGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 103733 0.69 0.78558
Target:  5'- uCCACCAUggaguauaccaagUUUggcgGACAGaCCACCaGCCUCAg -3'
miRNA:   3'- -GGUGGUA-------------GAG----UUGUC-GGUGG-CGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 5226 0.69 0.786512
Target:  5'- gCGCCGUCUCAaugucGCGGCgCACgcacgaCGUCUCGu -3'
miRNA:   3'- gGUGGUAGAGU-----UGUCG-GUG------GCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 52490 0.68 0.795749
Target:  5'- aCAUgGgcuUCAACAaCCGCCGCCUCAn -3'
miRNA:   3'- gGUGgUag-AGUUGUcGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 109384 0.68 0.795749
Target:  5'- gCCACCGUCaCAcuGCAGCCugacACCGUCg-- -3'
miRNA:   3'- -GGUGGUAGaGU--UGUCGG----UGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 128198 0.68 0.822511
Target:  5'- aCACCAcgCUCuuCaAGCUGCUGCUUCAu -3'
miRNA:   3'- gGUGGUa-GAGuuG-UCGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 128269 0.68 0.822511
Target:  5'- aCACCAcgCUCuuCaAGCUGCUGCUUCAu -3'
miRNA:   3'- gGUGGUa-GAGuuG-UCGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 95540 0.68 0.822511
Target:  5'- aUC-CCGUCUCcguuucggcaAGCAGCCACaCGCC-CGu -3'
miRNA:   3'- -GGuGGUAGAG----------UUGUCGGUG-GCGGaGU- -5'
22939 5' -55.3 NC_005137.2 + 39939 0.67 0.855663
Target:  5'- gCCGCCAUUgUCAGCAguguGCCACgUGCCg-- -3'
miRNA:   3'- -GGUGGUAG-AGUUGU----CGGUG-GCGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.