miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22939 5' -55.3 NC_005137.2 + 52541 1.11 0.002201
Target:  5'- gCCACCAUCUCAACAGCCACCGCCUCAg -3'
miRNA:   3'- -GGUGGUAGAGUUGUCGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 52490 0.68 0.795749
Target:  5'- aCAUgGgcuUCAACAaCCGCCGCCUCAn -3'
miRNA:   3'- gGUGgUag-AGUUGUcGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 42824 0.67 0.863448
Target:  5'- aUACCAUUUCAACAccGaCCgACCGCCa-- -3'
miRNA:   3'- gGUGGUAGAGUUGU--C-GG-UGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 48227 0.67 0.863448
Target:  5'- aUCACCGUUUCcGuuGCUGCCGCCg-- -3'
miRNA:   3'- -GGUGGUAGAGuUguCGGUGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 112581 0.67 0.878367
Target:  5'- cCCACCAgcgaaaagAGCAGCCGCCG-UUCAu -3'
miRNA:   3'- -GGUGGUagag----UUGUCGGUGGCgGAGU- -5'
22939 5' -55.3 NC_005137.2 + 130249 0.66 0.892382
Target:  5'- gCCGCCA----AACGuGCCGCCGCCa-- -3'
miRNA:   3'- -GGUGGUagagUUGU-CGGUGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 3413 0.66 0.917566
Target:  5'- gUACCAcgUUuACGGCCAUCGCCgggCAa -3'
miRNA:   3'- gGUGGUagAGuUGUCGGUGGCGGa--GU- -5'
22939 5' -55.3 NC_005137.2 + 130533 0.66 0.917566
Target:  5'- aCACg--CUgGGCAGCCGCCGCggCGg -3'
miRNA:   3'- gGUGguaGAgUUGUCGGUGGCGgaGU- -5'
22939 5' -55.3 NC_005137.2 + 46722 0.66 0.917566
Target:  5'- aCACCGUUUCcACGcgcGCCACCaccaGCCUgAa -3'
miRNA:   3'- gGUGGUAGAGuUGU---CGGUGG----CGGAgU- -5'
22939 5' -55.3 NC_005137.2 + 109384 0.68 0.795749
Target:  5'- gCCACCGUCaCAcuGCAGCCugacACCGUCg-- -3'
miRNA:   3'- -GGUGGUAGaGU--UGUCGG----UGGCGGagu -5'
22939 5' -55.3 NC_005137.2 + 70706 0.69 0.738369
Target:  5'- gCUGCCGagUUAACGGCUugCGCUUCu -3'
miRNA:   3'- -GGUGGUagAGUUGUCGGugGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 52568 1.11 0.002201
Target:  5'- gCCACCAUCUCAACAGCCACCGCCUCAg -3'
miRNA:   3'- -GGUGGUAGAGUUGUCGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 52616 0.9 0.056668
Target:  5'- gCCACCAcCUCAACAaCCGCCGCCUCAg -3'
miRNA:   3'- -GGUGGUaGAGUUGUcGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 52517 0.79 0.246974
Target:  5'- gCCACCGUUUCAA---CCGCCGCCUCAn -3'
miRNA:   3'- -GGUGGUAGAGUUgucGGUGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 130219 0.79 0.27209
Target:  5'- gCCACCA-CUUAAUguuauGCCACCGCCUCc -3'
miRNA:   3'- -GGUGGUaGAGUUGu----CGGUGGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 17568 0.73 0.522354
Target:  5'- gUCACCGcCUCAACaucauacuggccaAGCCGCCGCUUUg -3'
miRNA:   3'- -GGUGGUaGAGUUG-------------UCGGUGGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 52595 0.7 0.698081
Target:  5'- gCCACCAUCUCAACAGCC-UCa----- -3'
miRNA:   3'- -GGUGGUAGAGUUGUCGGuGGcggagu -5'
22939 5' -55.3 NC_005137.2 + 181 0.7 0.707247
Target:  5'- cUCGCUGUggaugUUCAugaugggGCAGCCACCGCCUUu -3'
miRNA:   3'- -GGUGGUA-----GAGU-------UGUCGGUGGCGGAGu -5'
22939 5' -55.3 NC_005137.2 + 61785 0.7 0.732408
Target:  5'- aCACCAUgUacugcACAGCCagacuaagcuguuugGCCGCCUCGu -3'
miRNA:   3'- gGUGGUAgAgu---UGUCGG---------------UGGCGGAGU- -5'
22939 5' -55.3 NC_005137.2 + 70853 0.72 0.615345
Target:  5'- -aGCCGUuaaCUCGGCAgcGCCACCGCCg-- -3'
miRNA:   3'- ggUGGUA---GAGUUGU--CGGUGGCGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.