miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22940 5' -51.7 NC_005137.2 + 98567 0.67 0.97384
Target:  5'- -cAACGCGCUgGUACAucACGCACuGUu -3'
miRNA:   3'- guUUGCGCGG-CAUGUu-UGCGUGcCAc -5'
22940 5' -51.7 NC_005137.2 + 69626 0.67 0.973005
Target:  5'- --uACGgGUCGUGCAAaucgcauucguauuGCGUGCGGUu -3'
miRNA:   3'- guuUGCgCGGCAUGUU--------------UGCGUGCCAc -5'
22940 5' -51.7 NC_005137.2 + 95642 0.67 0.970983
Target:  5'- -cGAUGCGcCCGUGCGGcGCGCAuccgacCGGUa -3'
miRNA:   3'- guUUGCGC-GGCAUGUU-UGCGU------GCCAc -5'
22940 5' -51.7 NC_005137.2 + 11787 0.67 0.970983
Target:  5'- cUAAACGCGCCGc-CGAGCu--CGGUGc -3'
miRNA:   3'- -GUUUGCGCGGCauGUUUGcguGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 97467 0.67 0.970983
Target:  5'- gUAGugGCGgCGUgACGcuCGCGCaGGUGg -3'
miRNA:   3'- -GUUugCGCgGCA-UGUuuGCGUG-CCAC- -5'
22940 5' -51.7 NC_005137.2 + 52073 0.67 0.964611
Target:  5'- gAAACGCGuuGU-----CGCACGGUa -3'
miRNA:   3'- gUUUGCGCggCAuguuuGCGUGCCAc -5'
22940 5' -51.7 NC_005137.2 + 98510 0.67 0.964611
Target:  5'- cCAAAC-CGgCGcACAAGCGUgACGGUGa -3'
miRNA:   3'- -GUUUGcGCgGCaUGUUUGCG-UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 98306 0.68 0.957317
Target:  5'- --cGCGCGCCGgcUAUAAAagGCGCGGc- -3'
miRNA:   3'- guuUGCGCGGC--AUGUUUg-CGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 49056 0.68 0.957317
Target:  5'- aCAGGua-GCCGUGCGAGCGCacuGCGGg- -3'
miRNA:   3'- -GUUUgcgCGGCAUGUUUGCG---UGCCac -5'
22940 5' -51.7 NC_005137.2 + 60854 0.68 0.956927
Target:  5'- aCGGGCGCGUCGUcguUAAGCGCuauuuuaGCGGa- -3'
miRNA:   3'- -GUUUGCGCGGCAu--GUUUGCG-------UGCCac -5'
22940 5' -51.7 NC_005137.2 + 33028 0.68 0.95331
Target:  5'- --cGCGuCGUCGUACGcGCGUugGGa- -3'
miRNA:   3'- guuUGC-GCGGCAUGUuUGCGugCCac -5'
22940 5' -51.7 NC_005137.2 + 22470 0.68 0.95331
Target:  5'- --cACGUGaaaaCCGUGCAAGcCGCGCGGc- -3'
miRNA:   3'- guuUGCGC----GGCAUGUUU-GCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 12847 0.68 0.95331
Target:  5'- -uGGCGCGCCGUuCcGACGCGCu--- -3'
miRNA:   3'- guUUGCGCGGCAuGuUUGCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 72288 0.68 0.95331
Target:  5'- uGGACGUGCCGcagcguuagGCGAACGUACGc-- -3'
miRNA:   3'- gUUUGCGCGGCa--------UGUUUGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 39736 0.68 0.949058
Target:  5'- gCAAuuGCGUGCUucACAAAUGCGUGGUGg -3'
miRNA:   3'- -GUU--UGCGCGGcaUGUUUGCGUGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 56328 0.68 0.944556
Target:  5'- uUAAACGUGCaCGUGCuugccuguucGACGaCGCGGUa -3'
miRNA:   3'- -GUUUGCGCG-GCAUGu---------UUGC-GUGCCAc -5'
22940 5' -51.7 NC_005137.2 + 99344 0.68 0.944556
Target:  5'- -cAGCGCGUgGUACGcgucggaacAAUGCACGGc- -3'
miRNA:   3'- guUUGCGCGgCAUGU---------UUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 100198 0.68 0.939801
Target:  5'- uGAACGCGCCGcGCGc-CGCGuCGGa- -3'
miRNA:   3'- gUUUGCGCGGCaUGUuuGCGU-GCCac -5'
22940 5' -51.7 NC_005137.2 + 100407 0.68 0.939801
Target:  5'- --cGCGCGcCCGUGCGuugcGGCGCcCGGa- -3'
miRNA:   3'- guuUGCGC-GGCAUGU----UUGCGuGCCac -5'
22940 5' -51.7 NC_005137.2 + 21788 0.69 0.933239
Target:  5'- aAAugGCGuuGcGCAAcaaaauaguucgacGCGCugGGUGu -3'
miRNA:   3'- gUUugCGCggCaUGUU--------------UGCGugCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.