miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22942 3' -49.5 NC_005137.2 + 76128 0.66 0.995521
Target:  5'- uGCGCcGUGcaccaACGCGCGCCGCGu--- -3'
miRNA:   3'- gCGUGuUACa----UGUGCGUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 123122 0.66 0.995521
Target:  5'- gCGC-CGGUGUGCACGUuuuccuacgugACgGCACg-- -3'
miRNA:   3'- -GCGuGUUACAUGUGCG-----------UGgUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 63308 0.66 0.995521
Target:  5'- gGCACA----ACGCGCGCCcuCACUa- -3'
miRNA:   3'- gCGUGUuacaUGUGCGUGGu-GUGAaa -5'
22942 3' -49.5 NC_005137.2 + 107970 0.66 0.995449
Target:  5'- aUGCGCGAUcggucgcGUugACGCGCgCGCAgCUUg -3'
miRNA:   3'- -GCGUGUUA-------CAugUGCGUG-GUGU-GAAa -5'
22942 3' -49.5 NC_005137.2 + 111671 0.66 0.995071
Target:  5'- aGCuCGcUGUACACGCGCCucgaauuuaugcaguACACa-- -3'
miRNA:   3'- gCGuGUuACAUGUGCGUGG---------------UGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 79844 0.66 0.99475
Target:  5'- gGCACGGUGUcgcugcACAUGCGCagcaGCugUg- -3'
miRNA:   3'- gCGUGUUACA------UGUGCGUGg---UGugAaa -5'
22942 3' -49.5 NC_005137.2 + 16743 0.66 0.99475
Target:  5'- cCGCGCAucaaUGCGCGCACauccauaACACUc- -3'
miRNA:   3'- -GCGUGUuac-AUGUGCGUGg------UGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 20699 0.66 0.99475
Target:  5'- uGCGCuuUGUGaaacuCGCACCACAa--- -3'
miRNA:   3'- gCGUGuuACAUgu---GCGUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 34643 0.66 0.994238
Target:  5'- gCGCGCcGUGUGCGagcgauuacccgaccCGcCACCGCACc-- -3'
miRNA:   3'- -GCGUGuUACAUGU---------------GC-GUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 96579 0.66 0.993875
Target:  5'- aCGCaACGcgGcggGCGCGuCGCCGCGCg-- -3'
miRNA:   3'- -GCG-UGUuaCa--UGUGC-GUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 70990 0.66 0.993875
Target:  5'- uGCGCcGUGUGC-CGCgACCACuACa-- -3'
miRNA:   3'- gCGUGuUACAUGuGCG-UGGUG-UGaaa -5'
22942 3' -49.5 NC_005137.2 + 112399 0.66 0.993875
Target:  5'- uGCGCGAU---CGCGCACgGCGCg-- -3'
miRNA:   3'- gCGUGUUAcauGUGCGUGgUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 67212 0.66 0.993875
Target:  5'- gCGCACcGUGUugACGCGCuUGCAa--- -3'
miRNA:   3'- -GCGUGuUACAugUGCGUG-GUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 1321 0.66 0.993875
Target:  5'- uGCACAAuuagacggcuUGUACACGUcuuCCGC-CUUg -3'
miRNA:   3'- gCGUGUU----------ACAUGUGCGu--GGUGuGAAa -5'
22942 3' -49.5 NC_005137.2 + 18887 0.66 0.993781
Target:  5'- gCGCACcuuucaaaucaaaAAcGUGCACGCACaUAUACUUg -3'
miRNA:   3'- -GCGUG-------------UUaCAUGUGCGUG-GUGUGAAa -5'
22942 3' -49.5 NC_005137.2 + 34943 0.66 0.992886
Target:  5'- gCGCACGagccgaGUGUucaagaaACGCugCGCACUg- -3'
miRNA:   3'- -GCGUGU------UACAug-----UGCGugGUGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 23320 0.66 0.992886
Target:  5'- aCGCACAcca-ACACGUgACCGCACg-- -3'
miRNA:   3'- -GCGUGUuacaUGUGCG-UGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 110862 0.66 0.992886
Target:  5'- gCGCACAccGU-UGCGCACgCGCGCa-- -3'
miRNA:   3'- -GCGUGUuaCAuGUGCGUG-GUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 42224 0.66 0.992886
Target:  5'- gGCACGcuuguuuuaaaAUGUACGCGUGCUgcggcaACACUa- -3'
miRNA:   3'- gCGUGU-----------UACAUGUGCGUGG------UGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 35554 0.66 0.991774
Target:  5'- gGCGCu-UGUcaagACACGCACCGCcgGCg-- -3'
miRNA:   3'- gCGUGuuACA----UGUGCGUGGUG--UGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.