miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22942 3' -49.5 NC_005137.2 + 61196 1.07 0.011916
Target:  5'- cCGCACAAUGUACACGCACCACACUUUg -3'
miRNA:   3'- -GCGUGUUACAUGUGCGUGGUGUGAAA- -5'
22942 3' -49.5 NC_005137.2 + 119579 0.81 0.410567
Target:  5'- aCGCACGcUGaGCACGUGCCACACUUc -3'
miRNA:   3'- -GCGUGUuACaUGUGCGUGGUGUGAAa -5'
22942 3' -49.5 NC_005137.2 + 56803 0.78 0.562506
Target:  5'- aGCACGAgGUcGCACGCguuGCCACACUUUa -3'
miRNA:   3'- gCGUGUUaCA-UGUGCG---UGGUGUGAAA- -5'
22942 3' -49.5 NC_005137.2 + 110717 0.78 0.562506
Target:  5'- gCGCaACGGUGUGCGCGCAgaGCGCUUg -3'
miRNA:   3'- -GCG-UGUUACAUGUGCGUggUGUGAAa -5'
22942 3' -49.5 NC_005137.2 + 26694 0.78 0.573316
Target:  5'- cCGCuaACAAacuugccGUACGCGCGCCACACUUUu -3'
miRNA:   3'- -GCG--UGUUa------CAUGUGCGUGGUGUGAAA- -5'
22942 3' -49.5 NC_005137.2 + 37583 0.75 0.750626
Target:  5'- aGCACucccuuuuguccGUACACGCugCACACUUUu -3'
miRNA:   3'- gCGUGuua---------CAUGUGCGugGUGUGAAA- -5'
22942 3' -49.5 NC_005137.2 + 48789 0.74 0.806243
Target:  5'- cCGCACAgcGUGUGCG-GCACUACAUUg- -3'
miRNA:   3'- -GCGUGU--UACAUGUgCGUGGUGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 56097 0.74 0.806243
Target:  5'- aCGCGCGGUGUuCAgGCGCCACuucuACUUc -3'
miRNA:   3'- -GCGUGUUACAuGUgCGUGGUG----UGAAa -5'
22942 3' -49.5 NC_005137.2 + 99505 0.73 0.842609
Target:  5'- cCGUGCAuUGUuccgACGCGUACCACGCg-- -3'
miRNA:   3'- -GCGUGUuACA----UGUGCGUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 1440 0.72 0.890432
Target:  5'- uGCAUuuUGUGCACGaCACCACGu--- -3'
miRNA:   3'- gCGUGuuACAUGUGC-GUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 21141 0.71 0.897524
Target:  5'- gGaCACAGUGUAC-CGCaaACCGCACg-- -3'
miRNA:   3'- gC-GUGUUACAUGuGCG--UGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 97091 0.71 0.910909
Target:  5'- aGCGCAAUGUuCAUGCA-CACGCg-- -3'
miRNA:   3'- gCGUGUUACAuGUGCGUgGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 57840 0.71 0.910909
Target:  5'- aGCGCGGaGaGCAUGUACCGCACa-- -3'
miRNA:   3'- gCGUGUUaCaUGUGCGUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 31646 0.71 0.910909
Target:  5'- aCGCGCGcgG-ACGCG-ACCACGCUg- -3'
miRNA:   3'- -GCGUGUuaCaUGUGCgUGGUGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 100230 0.71 0.917196
Target:  5'- aGCAC---GUGCGCGCGCCGCGg--- -3'
miRNA:   3'- gCGUGuuaCAUGUGCGUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 48876 0.71 0.917196
Target:  5'- uGCugGAacaUGUAC-UGCGCCGCGCUg- -3'
miRNA:   3'- gCGugUU---ACAUGuGCGUGGUGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 94445 0.71 0.919634
Target:  5'- gCGCGCAAacaauuaaacuCGCGCGCCACACa-- -3'
miRNA:   3'- -GCGUGUUacau-------GUGCGUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 2002 0.7 0.934413
Target:  5'- uGCACAGcucGUGCACGCugCgGCGCa-- -3'
miRNA:   3'- gCGUGUUa--CAUGUGCGugG-UGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 110592 0.7 0.934413
Target:  5'- gGcCGCGGUGUGCACGCucACCGuCGCg-- -3'
miRNA:   3'- gC-GUGUUACAUGUGCG--UGGU-GUGaaa -5'
22942 3' -49.5 NC_005137.2 + 17756 0.7 0.939603
Target:  5'- uGCACuccggaacGAcGUGCACGCGCCGCAa--- -3'
miRNA:   3'- gCGUG--------UUaCAUGUGCGUGGUGUgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.