miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22942 3' -49.5 NC_005137.2 + 33142 0.66 0.991774
Target:  5'- uGCAaacAUGUGCGCGCACUugGu--- -3'
miRNA:   3'- gCGUgu-UACAUGUGCGUGGugUgaaa -5'
22942 3' -49.5 NC_005137.2 + 35554 0.66 0.991774
Target:  5'- gGCGCu-UGUcaagACACGCACCGCcgGCg-- -3'
miRNA:   3'- gCGUGuuACA----UGUGCGUGGUG--UGaaa -5'
22942 3' -49.5 NC_005137.2 + 94290 0.66 0.991655
Target:  5'- gCGCGCGAguuuaauUGUuuGCGCGCCAuUACUg- -3'
miRNA:   3'- -GCGUGUU-------ACAugUGCGUGGU-GUGAaa -5'
22942 3' -49.5 NC_005137.2 + 10866 0.67 0.990528
Target:  5'- uGCGCGAUgcgGUGCACGCcaucgaacGCCACGa--- -3'
miRNA:   3'- gCGUGUUA---CAUGUGCG--------UGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 124007 0.67 0.990528
Target:  5'- uGCGCGgcGUGUAagcCGCGCGCuCACAgUUUu -3'
miRNA:   3'- gCGUGU--UACAU---GUGCGUG-GUGUgAAA- -5'
22942 3' -49.5 NC_005137.2 + 7079 0.67 0.98999
Target:  5'- aCGCACGcucGUGUGCACGUAauuuacguuggugCACACg-- -3'
miRNA:   3'- -GCGUGU---UACAUGUGCGUg------------GUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 108253 0.67 0.989139
Target:  5'- gCGCGCA----ACGCGUACCACAa--- -3'
miRNA:   3'- -GCGUGUuacaUGUGCGUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 21123 0.67 0.989139
Target:  5'- aGCGCGGcaaaACGCGCGCCGCAg--- -3'
miRNA:   3'- gCGUGUUaca-UGUGCGUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 95477 0.67 0.989139
Target:  5'- aCGUACcg-GUcggAUGCGCGCCGCACg-- -3'
miRNA:   3'- -GCGUGuuaCA---UGUGCGUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 96512 0.67 0.989139
Target:  5'- cCGuCGCGGcGUaaGCACGCACCACGa--- -3'
miRNA:   3'- -GC-GUGUUaCA--UGUGCGUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 95175 0.67 0.987596
Target:  5'- cCGCACAuUG-ACGCcguGCACUACGCa-- -3'
miRNA:   3'- -GCGUGUuACaUGUG---CGUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 112559 0.67 0.987596
Target:  5'- uGCACAAUG-GCGCGCcgugcgcgAUCGCGCa-- -3'
miRNA:   3'- gCGUGUUACaUGUGCG--------UGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 116876 0.67 0.987596
Target:  5'- uGCGC-AUGUGCGCuGCcCCGCgACUUg -3'
miRNA:   3'- gCGUGuUACAUGUG-CGuGGUG-UGAAa -5'
22942 3' -49.5 NC_005137.2 + 122771 0.67 0.987596
Target:  5'- aCGCGCAguaacgAUGUGcCACGCAUC-CGCg-- -3'
miRNA:   3'- -GCGUGU------UACAU-GUGCGUGGuGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 110557 0.67 0.985888
Target:  5'- cCGC-CGAUGUGCGCccGCACCuGCGuCUUg -3'
miRNA:   3'- -GCGuGUUACAUGUG--CGUGG-UGU-GAAa -5'
22942 3' -49.5 NC_005137.2 + 31803 0.68 0.981941
Target:  5'- uGCACAGcGUGguCGCGuCCGCGCg-- -3'
miRNA:   3'- gCGUGUUaCAUguGCGU-GGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 89505 0.68 0.979681
Target:  5'- gGguCAAUGUGCACaCGCCgACACa-- -3'
miRNA:   3'- gCguGUUACAUGUGcGUGG-UGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 35312 0.68 0.979681
Target:  5'- gGUGCGGUgGUGgGCGuCACCACGCg-- -3'
miRNA:   3'- gCGUGUUA-CAUgUGC-GUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 39774 0.68 0.977218
Target:  5'- aCGC-CGAUcGUACAUGUGCUGCGCUc- -3'
miRNA:   3'- -GCGuGUUA-CAUGUGCGUGGUGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 100212 0.68 0.977218
Target:  5'- gGCACAaagcAUGcugaACGCGCCGCGCg-- -3'
miRNA:   3'- gCGUGU----UACaug-UGCGUGGUGUGaaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.