miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22942 3' -49.5 NC_005137.2 + 116876 0.67 0.987596
Target:  5'- uGCGC-AUGUGCGCuGCcCCGCgACUUg -3'
miRNA:   3'- gCGUGuUACAUGUG-CGuGGUG-UGAAa -5'
22942 3' -49.5 NC_005137.2 + 72368 0.69 0.953553
Target:  5'- uGCACGcuaGUGUACACGCGCaauucggcgGCGCa-- -3'
miRNA:   3'- gCGUGU---UACAUGUGCGUGg--------UGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 130862 0.69 0.960783
Target:  5'- aCGCGCAGcccgcgccugaauUGUACgccgcggACGCGCCGCAgUUUu -3'
miRNA:   3'- -GCGUGUU-------------ACAUG-------UGCGUGGUGUgAAA- -5'
22942 3' -49.5 NC_005137.2 + 38569 0.69 0.961536
Target:  5'- uCGCaaugaGCAAUGU-CAUGCACCGgACUg- -3'
miRNA:   3'- -GCG-----UGUUACAuGUGCGUGGUgUGAaa -5'
22942 3' -49.5 NC_005137.2 + 7011 0.68 0.971642
Target:  5'- gGCACAAcGUggcGCACGCGCguCACg-- -3'
miRNA:   3'- gCGUGUUaCA---UGUGCGUGguGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 89505 0.68 0.979681
Target:  5'- gGguCAAUGUGCACaCGCCgACACa-- -3'
miRNA:   3'- gCguGUUACAUGUGcGUGG-UGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 35312 0.68 0.979681
Target:  5'- gGUGCGGUgGUGgGCGuCACCACGCg-- -3'
miRNA:   3'- gCGUGUUA-CAUgUGC-GUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 110557 0.67 0.985888
Target:  5'- cCGC-CGAUGUGCGCccGCACCuGCGuCUUg -3'
miRNA:   3'- -GCGuGUUACAUGUG--CGUGG-UGU-GAAa -5'
22942 3' -49.5 NC_005137.2 + 95175 0.67 0.987596
Target:  5'- cCGCACAuUG-ACGCcguGCACUACGCa-- -3'
miRNA:   3'- -GCGUGUuACaUGUG---CGUGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 112886 0.7 0.94917
Target:  5'- aGCACGcgGgcUGCGCGUACCcgACGCUa- -3'
miRNA:   3'- gCGUGUuaC--AUGUGCGUGG--UGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 17756 0.7 0.939603
Target:  5'- uGCACuccggaacGAcGUGCACGCGCCGCAa--- -3'
miRNA:   3'- gCGUG--------UUaCAUGUGCGUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 2002 0.7 0.934413
Target:  5'- uGCACAGcucGUGCACGCugCgGCGCa-- -3'
miRNA:   3'- gCGUGUUa--CAUGUGCGugG-UGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 119579 0.81 0.410567
Target:  5'- aCGCACGcUGaGCACGUGCCACACUUc -3'
miRNA:   3'- -GCGUGUuACaUGUGCGUGGUGUGAAa -5'
22942 3' -49.5 NC_005137.2 + 110717 0.78 0.562506
Target:  5'- gCGCaACGGUGUGCGCGCAgaGCGCUUg -3'
miRNA:   3'- -GCG-UGUUACAUGUGCGUggUGUGAAa -5'
22942 3' -49.5 NC_005137.2 + 37583 0.75 0.750626
Target:  5'- aGCACucccuuuuguccGUACACGCugCACACUUUu -3'
miRNA:   3'- gCGUGuua---------CAUGUGCGugGUGUGAAA- -5'
22942 3' -49.5 NC_005137.2 + 48789 0.74 0.806243
Target:  5'- cCGCACAgcGUGUGCG-GCACUACAUUg- -3'
miRNA:   3'- -GCGUGU--UACAUGUgCGUGGUGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 1440 0.72 0.890432
Target:  5'- uGCAUuuUGUGCACGaCACCACGu--- -3'
miRNA:   3'- gCGUGuuACAUGUGC-GUGGUGUgaaa -5'
22942 3' -49.5 NC_005137.2 + 21141 0.71 0.897524
Target:  5'- gGaCACAGUGUAC-CGCaaACCGCACg-- -3'
miRNA:   3'- gC-GUGUUACAUGuGCG--UGGUGUGaaa -5'
22942 3' -49.5 NC_005137.2 + 31646 0.71 0.910909
Target:  5'- aCGCGCGcgG-ACGCG-ACCACGCUg- -3'
miRNA:   3'- -GCGUGUuaCaUGUGCgUGGUGUGAaa -5'
22942 3' -49.5 NC_005137.2 + 48876 0.71 0.917196
Target:  5'- uGCugGAacaUGUAC-UGCGCCGCGCUg- -3'
miRNA:   3'- gCGugUU---ACAUGuGCGUGGUGUGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.