miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22942 5' -46.9 NC_005137.2 + 30375 0.68 0.996715
Target:  5'- --uGAC-CGUAAUGCGUGCcuguGCGCa -3'
miRNA:   3'- uguUUGaGUAUUACGCGCGuu--UGCGc -5'
22942 5' -46.9 NC_005137.2 + 31630 0.71 0.979014
Target:  5'- gGCcAACggUCAgugcacGCGCGCGGACGCGa -3'
miRNA:   3'- -UGuUUG--AGUauua--CGCGCGUUUGCGC- -5'
22942 5' -46.9 NC_005137.2 + 100013 0.71 0.985444
Target:  5'- cACcAACUCcaGcgGUGCGCAAgcACGCGg -3'
miRNA:   3'- -UGuUUGAGuaUuaCGCGCGUU--UGCGC- -5'
22942 5' -46.9 NC_005137.2 + 12195 0.7 0.990248
Target:  5'- gGCAGGCacacCAUAGgcacGCGCGCAuguAACGCu -3'
miRNA:   3'- -UGUUUGa---GUAUUa---CGCGCGU---UUGCGc -5'
22942 5' -46.9 NC_005137.2 + 5052 0.7 0.992013
Target:  5'- cGCAAACgagaCGUcGUGCGUGCGccgcgacauugagacGGCGCGu -3'
miRNA:   3'- -UGUUUGa---GUAuUACGCGCGU---------------UUGCGC- -5'
22942 5' -46.9 NC_005137.2 + 116803 0.69 0.992687
Target:  5'- aACAA--UCAUGGcUGCGUguugGCAGGCGCGg -3'
miRNA:   3'- -UGUUugAGUAUU-ACGCG----CGUUUGCGC- -5'
22942 5' -46.9 NC_005137.2 + 50096 0.69 0.992687
Target:  5'- cACGGccGCgCA-AAUGCGCGUGAGCGUGg -3'
miRNA:   3'- -UGUU--UGaGUaUUACGCGCGUUUGCGC- -5'
22942 5' -46.9 NC_005137.2 + 2322 0.69 0.996107
Target:  5'- cGCAAcgcGCUCGUGGagGCGUGCAuggccguaAACGUGc -3'
miRNA:   3'- -UGUU---UGAGUAUUa-CGCGCGU--------UUGCGC- -5'
22942 5' -46.9 NC_005137.2 + 50718 0.69 0.996107
Target:  5'- uUAAAUggCGUAAgcuUGCGuUGCAAACGCGa -3'
miRNA:   3'- uGUUUGa-GUAUU---ACGC-GCGUUUGCGC- -5'
22942 5' -46.9 NC_005137.2 + 43732 0.71 0.976462
Target:  5'- aGCAAgaaUCGUGGUaGCGCGUAAgcuGCGCGc -3'
miRNA:   3'- -UGUUug-AGUAUUA-CGCGCGUU---UGCGC- -5'
22942 5' -46.9 NC_005137.2 + 16089 0.72 0.973689
Target:  5'- uGCAAAUUCAgu-UGUGUGCAGACuaGg -3'
miRNA:   3'- -UGUUUGAGUauuACGCGCGUUUGcgC- -5'
22942 5' -46.9 NC_005137.2 + 93459 0.72 0.967447
Target:  5'- uGCAuACgggCAcGGUGCGCGCcAGCGCc -3'
miRNA:   3'- -UGUuUGa--GUaUUACGCGCGuUUGCGc -5'
22942 5' -46.9 NC_005137.2 + 96352 0.8 0.65236
Target:  5'- --cAACUCGUGGUGCGUGCuuACGCc -3'
miRNA:   3'- uguUUGAGUAUUACGCGCGuuUGCGc -5'
22942 5' -46.9 NC_005137.2 + 63001 0.76 0.837675
Target:  5'- gGCGGACcCAUGGUGCgGCGCcGGCGUGu -3'
miRNA:   3'- -UGUUUGaGUAUUACG-CGCGuUUGCGC- -5'
22942 5' -46.9 NC_005137.2 + 116619 0.76 0.837675
Target:  5'- cGCAAuUUCAUuuUGUGUGCGAGCGCa -3'
miRNA:   3'- -UGUUuGAGUAuuACGCGCGUUUGCGc -5'
22942 5' -46.9 NC_005137.2 + 16581 0.74 0.932172
Target:  5'- -gAGugUUAUGgauGUGCGCGCAuugauGCGCGg -3'
miRNA:   3'- ugUUugAGUAU---UACGCGCGUu----UGCGC- -5'
22942 5' -46.9 NC_005137.2 + 64132 0.73 0.937535
Target:  5'- cGCGuGCUUAUGacGUGCGUGgAAGCGCa -3'
miRNA:   3'- -UGUuUGAGUAU--UACGCGCgUUUGCGc -5'
22942 5' -46.9 NC_005137.2 + 26626 0.73 0.947426
Target:  5'- cACAAaaugacGCUCGUAcaagcGUGCGCGUcgcAGCGCGa -3'
miRNA:   3'- -UGUU------UGAGUAU-----UACGCGCGu--UUGCGC- -5'
22942 5' -46.9 NC_005137.2 + 71972 0.73 0.947426
Target:  5'- aACAAACUgaCGUAcAUGCGCGU-AGCGCa -3'
miRNA:   3'- -UGUUUGA--GUAU-UACGCGCGuUUGCGc -5'
22942 5' -46.9 NC_005137.2 + 2559 0.72 0.96396
Target:  5'- aACGAGCUgAUugaGGUGCaGCGCAuuAACGCa -3'
miRNA:   3'- -UGUUUGAgUA---UUACG-CGCGU--UUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.