Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22943 | 3' | -62.1 | NC_005137.2 | + | 5066 | 0.68 | 0.452229 |
Target: 5'- cGUGCGuGCGCCgcgacauugagacGGCGcGUCgacuuaacagaGGCGAGCUu -3' miRNA: 3'- -CACGC-CGCGG-------------CCGCaCAG-----------CCGUUCGA- -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 25681 | 0.66 | 0.595485 |
Target: 5'- -gGCGGCGUUugcagacaaGGUggauugggacgcgGUGUCGGCGAGUc -3' miRNA: 3'- caCGCCGCGG---------CCG-------------CACAGCCGUUCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 26521 | 0.69 | 0.409513 |
Target: 5'- -cGCGGCGCUGGCugcguuuugcGUGcCGGU-AGCg -3' miRNA: 3'- caCGCCGCGGCCG----------CACaGCCGuUCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 31030 | 0.71 | 0.309215 |
Target: 5'- cUGCGGCGCauuGGCGUucgGUCGuGCAcGCUu -3' miRNA: 3'- cACGCCGCGg--CCGCA---CAGC-CGUuCGA- -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 31158 | 0.67 | 0.518135 |
Target: 5'- -aGCGGCGCCGaccaGCGUGcgCGGUuGGg- -3' miRNA: 3'- caCGCCGCGGC----CGCACa-GCCGuUCga -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 35515 | 0.71 | 0.295554 |
Target: 5'- -aGCGGCGCCuGCGUguuguuggucggGUCGGCuucguaauAAGCUa -3' miRNA: 3'- caCGCCGCGGcCGCA------------CAGCCG--------UUCGA- -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 48782 | 0.73 | 0.228766 |
Target: 5'- -cGCGGCGCCGcacaGCGUGUgCGGCAcuacauuGCg -3' miRNA: 3'- caCGCCGCGGC----CGCACA-GCCGUu------CGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 48925 | 0.66 | 0.566746 |
Target: 5'- uGUGCGGCGCCGcguccaacgaucGCGccgccuUGuUCGGCGacaagAGCg -3' miRNA: 3'- -CACGCCGCGGC------------CGC------AC-AGCCGU-----UCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 55567 | 0.73 | 0.234269 |
Target: 5'- -gGCGGCGCCGuGCGcGUgGaGCAAGUUg -3' miRNA: 3'- caCGCCGCGGC-CGCaCAgC-CGUUCGA- -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 63012 | 1.06 | 0.001012 |
Target: 5'- gGUGCGGCGCCGGCGUGUCGGCAAGCUu -3' miRNA: 3'- -CACGCCGCGGCCGCACAGCCGUUCGA- -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 70159 | 0.69 | 0.384632 |
Target: 5'- -gGCGGUGUCGGUgaagGUGUUGGCGucGGUg -3' miRNA: 3'- caCGCCGCGGCCG----CACAGCCGU--UCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 70175 | 0.67 | 0.508604 |
Target: 5'- -cGCGGUGCCGuGgGauUGcCGGCGGGUg -3' miRNA: 3'- caCGCCGCGGC-CgC--ACaGCCGUUCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 70198 | 0.66 | 0.566746 |
Target: 5'- gGUGgaGGCGUCGGUgaagGUGUUGGUgaAGGCg -3' miRNA: 3'- -CACg-CCGCGGCCG----CACAGCCG--UUCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 70258 | 0.67 | 0.48977 |
Target: 5'- gGUGaaGGCGUCGGUaaagGUGUUGGCGgaGGCg -3' miRNA: 3'- -CACg-CCGCGGCCG----CACAGCCGU--UCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 70306 | 0.67 | 0.48977 |
Target: 5'- gGUGaaGGCGUCGGUaaagGUGUUGGCGgaGGCg -3' miRNA: 3'- -CACg-CCGCGGCCG----CACAGCCGU--UCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 70360 | 0.67 | 0.526773 |
Target: 5'- gGUGUuggcgaaGGCGUCGGUgaagGUGUUGGCGgaGGCg -3' miRNA: 3'- -CACG-------CCGCGGCCG----CACAGCCGU--UCGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 96456 | 0.83 | 0.04575 |
Target: 5'- uUGC-GCGCCGGCGUGUCGGCGAauGCa -3' miRNA: 3'- cACGcCGCGGCCGCACAGCCGUU--CGa -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 96564 | 0.67 | 0.537404 |
Target: 5'- -cGCGuCGCCGcGCGgguagcgGUCGGCGcGGCUc -3' miRNA: 3'- caCGCcGCGGC-CGCa------CAGCCGU-UCGA- -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 100048 | 0.67 | 0.48977 |
Target: 5'- -cGCGGCGCgCGGCGcGuUCaGCAuGCUu -3' miRNA: 3'- caCGCCGCG-GCCGCaC-AGcCGUuCGA- -5' |
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22943 | 3' | -62.1 | NC_005137.2 | + | 103818 | 0.67 | 0.527737 |
Target: 5'- uGUGCGGCGgCGGguugGUGcaCGGCAuaAGCa -3' miRNA: 3'- -CACGCCGCgGCCg---CACa-GCCGU--UCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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