miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22943 5' -51.2 NC_005137.2 + 14377 0.67 0.96422
Target:  5'- -aAGUCUGAAUGCGCCcgacgguccaCCGCaUACCg -3'
miRNA:   3'- aaUCAGAUUUGUGUGGc---------GGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 7105 0.67 0.96422
Target:  5'- -cGGUCUuGACACgACCaCCGCUuCGCa -3'
miRNA:   3'- aaUCAGAuUUGUG-UGGcGGCGA-GUGg -5'
22943 5' -51.2 NC_005137.2 + 65421 0.67 0.96422
Target:  5'- aUGGUCaccgu-CGCCGCCggGCUCGCUg -3'
miRNA:   3'- aAUCAGauuuguGUGGCGG--CGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 37428 0.67 0.96422
Target:  5'- --cGUUUGGAUcaGCgugauuGCCGCCGCgCACCa -3'
miRNA:   3'- aauCAGAUUUG--UG------UGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 95483 0.68 0.956757
Target:  5'- -cGGUCggauGCGCGCCGCacgggCGCaUCGCUg -3'
miRNA:   3'- aaUCAGauu-UGUGUGGCG-----GCG-AGUGG- -5'
22943 5' -51.2 NC_005137.2 + 93200 0.68 0.956757
Target:  5'- -cAGUCgaaaauACACACCGUCcacCUCAUCa -3'
miRNA:   3'- aaUCAGauu---UGUGUGGCGGc--GAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 63170 0.68 0.952654
Target:  5'- -aAG-CUugccGACACGCCGgCGCcgCACCa -3'
miRNA:   3'- aaUCaGAu---UUGUGUGGCgGCGa-GUGG- -5'
22943 5' -51.2 NC_005137.2 + 95866 0.68 0.952654
Target:  5'- --uGUUUAAucgGCACACCGCCGa-CACg -3'
miRNA:   3'- aauCAGAUU---UGUGUGGCGGCgaGUGg -5'
22943 5' -51.2 NC_005137.2 + 81619 0.68 0.952654
Target:  5'- -gGGUCgugcACACGCCGgaaCGUUCACUc -3'
miRNA:   3'- aaUCAGauu-UGUGUGGCg--GCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 63288 0.68 0.938807
Target:  5'- -cGGUCU-----CGCCGUCGCUCGCg -3'
miRNA:   3'- aaUCAGAuuuguGUGGCGGCGAGUGg -5'
22943 5' -51.2 NC_005137.2 + 72068 0.69 0.922599
Target:  5'- -gGGUCgacuuGCACcgaAUCGCUGCUCugCg -3'
miRNA:   3'- aaUCAGauu--UGUG---UGGCGGCGAGugG- -5'
22943 5' -51.2 NC_005137.2 + 128300 0.69 0.916059
Target:  5'- -aAGUC-AAACACGacuugugcuuaauUCGCCGC-CACCg -3'
miRNA:   3'- aaUCAGaUUUGUGU-------------GGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 35560 0.69 0.91047
Target:  5'- --uGUCaAGacACGCACCGCCGg-CGCCa -3'
miRNA:   3'- aauCAGaUU--UGUGUGGCGGCgaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 93560 0.69 0.91047
Target:  5'- -aAGUUUAAACGCAacgCGCCGUcgUCGCa -3'
miRNA:   3'- aaUCAGAUUUGUGUg--GCGGCG--AGUGg -5'
22943 5' -51.2 NC_005137.2 + 104702 0.7 0.897296
Target:  5'- -gAGUCc-AGCGCGCCGCCGUUgUACg -3'
miRNA:   3'- aaUCAGauUUGUGUGGCGGCGA-GUGg -5'
22943 5' -51.2 NC_005137.2 + 60377 0.7 0.882364
Target:  5'- -aGGUCUGuGACcaaggaaACGCUGCaGCUCACCa -3'
miRNA:   3'- aaUCAGAU-UUG-------UGUGGCGgCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 100206 0.7 0.875629
Target:  5'- -aAGcaugCUGAACGCGCCGCgCGC-CGCg -3'
miRNA:   3'- aaUCa---GAUUUGUGUGGCG-GCGaGUGg -5'
22943 5' -51.2 NC_005137.2 + 69431 0.71 0.859971
Target:  5'- --cGcCUAAACGCGCCGCgacCGCgcaCGCCg -3'
miRNA:   3'- aauCaGAUUUGUGUGGCG---GCGa--GUGG- -5'
22943 5' -51.2 NC_005137.2 + 11788 0.71 0.851796
Target:  5'- ----cCUAAACGCGCCGCCgaGCUCGgUg -3'
miRNA:   3'- aaucaGAUUUGUGUGGCGG--CGAGUgG- -5'
22943 5' -51.2 NC_005137.2 + 108786 0.72 0.788875
Target:  5'- cUUGGUCgcGugGCACCGucaCCGC-CACCa -3'
miRNA:   3'- -AAUCAGauUugUGUGGC---GGCGaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.