miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22944 3' -59.1 NC_005137.2 + 61723 0.66 0.808166
Target:  5'- gGCGGCGGcaauuauuaucauuaCGUGCucaacgaaaaaaAUCGCGcgCGCGUCg -3'
miRNA:   3'- -CGCUGCCa--------------GCGCG------------UAGCGCa-GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 65664 0.66 0.80731
Target:  5'- gGCGuCGGccuUUGCGUuguuUCGCaaUCGUGCCa -3'
miRNA:   3'- -CGCuGCC---AGCGCGu---AGCGc-AGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 98585 0.66 0.80731
Target:  5'- cGC-ACuGUUGCGCAccUCGCaaaGCGCCg -3'
miRNA:   3'- -CGcUGcCAGCGCGU--AGCGcagCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 99937 0.66 0.806453
Target:  5'- gGCGACGcG-CaCGCAUguuggacaacggcCGCGgccgCGCGCCu -3'
miRNA:   3'- -CGCUGC-CaGcGCGUA-------------GCGCa---GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 27622 0.66 0.806453
Target:  5'- cUGGCGG-CGCaCGUCGCGacgucaaUUGCGCg -3'
miRNA:   3'- cGCUGCCaGCGcGUAGCGC-------AGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 63458 0.66 0.798673
Target:  5'- aGUGAgGG-CGCGCGUUGUGccCGCGa- -3'
miRNA:   3'- -CGCUgCCaGCGCGUAGCGCa-GCGCgg -5'
22944 3' -59.1 NC_005137.2 + 1846 0.66 0.798673
Target:  5'- aUGuCGGgacuaagauugCGCGCGUUGCugacCGCGCCg -3'
miRNA:   3'- cGCuGCCa----------GCGCGUAGCGca--GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 63921 0.66 0.798673
Target:  5'- gGCgGACGGUU-CGCA-CGCGgUGCGCg -3'
miRNA:   3'- -CG-CUGCCAGcGCGUaGCGCaGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 60016 0.66 0.798673
Target:  5'- gGCcGCGGUCGUGCAcguaaUCGCcGUUuaGCa -3'
miRNA:   3'- -CGcUGCCAGCGCGU-----AGCG-CAGcgCGg -5'
22944 3' -59.1 NC_005137.2 + 11208 0.66 0.789894
Target:  5'- uGCGuucGCGGUCGCGUAUacaGUuuuuucugCGCGCa -3'
miRNA:   3'- -CGC---UGCCAGCGCGUAg--CGca------GCGCGg -5'
22944 3' -59.1 NC_005137.2 + 125020 0.66 0.789894
Target:  5'- gGCGAuCGGUUGCG----GCGUgGCGCa -3'
miRNA:   3'- -CGCU-GCCAGCGCguagCGCAgCGCGg -5'
22944 3' -59.1 NC_005137.2 + 48925 0.66 0.789894
Target:  5'- uGUG-CGG-CGcCGCGUCcaaCGaUCGCGCCg -3'
miRNA:   3'- -CGCuGCCaGC-GCGUAGc--GC-AGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 112399 0.66 0.789894
Target:  5'- uGCG-CGaUCGCGCA-CG-G-CGCGCCa -3'
miRNA:   3'- -CGCuGCcAGCGCGUaGCgCaGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 79869 0.66 0.78098
Target:  5'- uGCGGCGGgcaGCgGCAUaaCGagUGCGCCa -3'
miRNA:   3'- -CGCUGCCag-CG-CGUAgcGCa-GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 110624 0.66 0.78098
Target:  5'- gGUGACGGcCGUGCAcaaaCGCGcCGaCGgCg -3'
miRNA:   3'- -CGCUGCCaGCGCGUa---GCGCaGC-GCgG- -5'
22944 3' -59.1 NC_005137.2 + 36677 0.66 0.780082
Target:  5'- cGCGACGG-CaCGCGUgGUGUuuaucaauuuuuaCGCGCa -3'
miRNA:   3'- -CGCUGCCaGcGCGUAgCGCA-------------GCGCGg -5'
22944 3' -59.1 NC_005137.2 + 130467 0.66 0.771942
Target:  5'- uGCGAuCGGUaGCGCcuuugCGCGgcucugacaucaUCGCGUCu -3'
miRNA:   3'- -CGCU-GCCAgCGCGua---GCGC------------AGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 43972 0.66 0.771942
Target:  5'- uCGACGGgcgCGgGCGgcuGC-UCGUGCCg -3'
miRNA:   3'- cGCUGCCa--GCgCGUag-CGcAGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 38946 0.66 0.771942
Target:  5'- cGUGugGGcagcgaagugaCGCGCAUCaccaacgacaGCGU-GCGCCa -3'
miRNA:   3'- -CGCugCCa----------GCGCGUAG----------CGCAgCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 100215 0.67 0.765544
Target:  5'- cGCGGCacaaagcaugcugaaCGCGCcgCGCGcCGCGUCg -3'
miRNA:   3'- -CGCUGcca------------GCGCGuaGCGCaGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.