miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22944 3' -59.1 NC_005137.2 + 63643 1.12 0.001038
Target:  5'- gGCGACGGUCGCGCAUCGCGUCGCGCCc -3'
miRNA:   3'- -CGCUGCCAGCGCGUAGCGCAGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 107973 0.79 0.181746
Target:  5'- cGCGAuCGGUCGCGUugaCGCG-CGCGCa -3'
miRNA:   3'- -CGCU-GCCAGCGCGua-GCGCaGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 45264 0.77 0.224054
Target:  5'- uGCGACGcGUCGCGCGccCGCGaguggcagagcaagUCGCGCg -3'
miRNA:   3'- -CGCUGC-CAGCGCGUa-GCGC--------------AGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 72492 0.77 0.236559
Target:  5'- aGCGGCGcagcUCGCGCAauUCGCGUUcggacagugGCGCCg -3'
miRNA:   3'- -CGCUGCc---AGCGCGU--AGCGCAG---------CGCGG- -5'
22944 3' -59.1 NC_005137.2 + 35033 0.77 0.241609
Target:  5'- aCGuACGGUacgcccaUGCGCAUCGCGUUGCccGCCg -3'
miRNA:   3'- cGC-UGCCA-------GCGCGUAGCGCAGCG--CGG- -5'
22944 3' -59.1 NC_005137.2 + 102419 0.74 0.347588
Target:  5'- --uGCGGUCGCGUA-CGCGUCGC-CUg -3'
miRNA:   3'- cgcUGCCAGCGCGUaGCGCAGCGcGG- -5'
22944 3' -59.1 NC_005137.2 + 10712 0.74 0.355166
Target:  5'- uCGAUGGcgugcaccgcaUCGCGCA-CGCGUCG-GCCa -3'
miRNA:   3'- cGCUGCC-----------AGCGCGUaGCGCAGCgCGG- -5'
22944 3' -59.1 NC_005137.2 + 96573 0.73 0.378593
Target:  5'- cGCGGCGG--GCGCGUCGC--CGCGCg -3'
miRNA:   3'- -CGCUGCCagCGCGUAGCGcaGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 42823 0.73 0.378593
Target:  5'- uCGAUuG-CGCGCuUgGCGUCGCGCCa -3'
miRNA:   3'- cGCUGcCaGCGCGuAgCGCAGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 96477 0.73 0.411401
Target:  5'- cGCGAacgcaacaCGGU-GCGCGUCGUGUCcacggGCGCUa -3'
miRNA:   3'- -CGCU--------GCCAgCGCGUAGCGCAG-----CGCGG- -5'
22944 3' -59.1 NC_005137.2 + 110435 0.73 0.419874
Target:  5'- cGCGACGGUgagCGUGCAcacCGCGgccggCGCGUa -3'
miRNA:   3'- -CGCUGCCA---GCGCGUa--GCGCa----GCGCGg -5'
22944 3' -59.1 NC_005137.2 + 81781 0.72 0.431912
Target:  5'- uGCGAacCGcacuagaguuuuugcGUCGCGCGUCGCGUaucgaUGUGCCc -3'
miRNA:   3'- -CGCU--GC---------------CAGCGCGUAGCGCA-----GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 100264 0.72 0.454792
Target:  5'- cGC-ACGGgCGCGCGUCGCGgcauUCaCGCCc -3'
miRNA:   3'- -CGcUGCCaGCGCGUAGCGC----AGcGCGG- -5'
22944 3' -59.1 NC_005137.2 + 108152 0.72 0.463765
Target:  5'- gGCGGCGG-CG-GCGUCgguauGCG-CGCGCCc -3'
miRNA:   3'- -CGCUGCCaGCgCGUAG-----CGCaGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 31798 0.71 0.481984
Target:  5'- aGCG-UGGUCGCGuCcgCGCG-CGUGCa -3'
miRNA:   3'- -CGCuGCCAGCGC-GuaGCGCaGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 110716 0.71 0.481984
Target:  5'- uGCGcaACGGUgugCGCGCAgagCGCuugUGCGCCg -3'
miRNA:   3'- -CGC--UGCCA---GCGCGUa--GCGca-GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 28228 0.71 0.490295
Target:  5'- cGCGcuGCGuguacagccGUCugGCGCAUcccagcgCGCGUCGCGCCa -3'
miRNA:   3'- -CGC--UGC---------CAG--CGCGUA-------GCGCAGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 24592 0.71 0.491222
Target:  5'- cGUGACGGUguucaGCGUGUUGCauGUUGCGCg -3'
miRNA:   3'- -CGCUGCCAg----CGCGUAGCG--CAGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 17322 0.71 0.491222
Target:  5'- uGCGACG--UGCGCGUCGCagauaaUgGCGCCa -3'
miRNA:   3'- -CGCUGCcaGCGCGUAGCGc-----AgCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 42169 0.71 0.500541
Target:  5'- uCGugGaGUUGgccaGCGUCGCGUC-CGCCg -3'
miRNA:   3'- cGCugC-CAGCg---CGUAGCGCAGcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.