miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22944 3' -59.1 NC_005137.2 + 64147 0.67 0.762786
Target:  5'- uGCGugGaa-GCGCAcccgugCGCGUUuaacgGCGCCg -3'
miRNA:   3'- -CGCugCcagCGCGUa-----GCGCAG-----CGCGG- -5'
22944 3' -59.1 NC_005137.2 + 31627 0.67 0.762786
Target:  5'- gGCGgccaACGGUCaGUGCAcgCGCGcggaCGCGaCCa -3'
miRNA:   3'- -CGC----UGCCAG-CGCGUa-GCGCa---GCGC-GG- -5'
22944 3' -59.1 NC_005137.2 + 46262 0.67 0.762786
Target:  5'- cGCG-UGGUCcacgcucguGCGUGUUGCacGUCGCGUCc -3'
miRNA:   3'- -CGCuGCCAG---------CGCGUAGCG--CAGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 44323 0.67 0.762786
Target:  5'- aGUGACGGUgUGCaGCGUCagcaacuugauGCGUCGuCGUUg -3'
miRNA:   3'- -CGCUGCCA-GCG-CGUAG-----------CGCAGC-GCGG- -5'
22944 3' -59.1 NC_005137.2 + 58709 0.67 0.762786
Target:  5'- cGCGGCac-CGUGCAcaguuuucuggUCGgGUCGCGCa -3'
miRNA:   3'- -CGCUGccaGCGCGU-----------AGCgCAGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 13630 0.67 0.75352
Target:  5'- uGCGACuGUCGuUGUA-CGCGaUCGCGUUc -3'
miRNA:   3'- -CGCUGcCAGC-GCGUaGCGC-AGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 69171 0.67 0.75352
Target:  5'- -aGcCGGaugCGCGCcagaAUgGCGUCGCuGCCa -3'
miRNA:   3'- cgCuGCCa--GCGCG----UAgCGCAGCG-CGG- -5'
22944 3' -59.1 NC_005137.2 + 123489 0.67 0.75352
Target:  5'- gGCG-CGGUUgGCGCA--GCGUCcauGUGCCu -3'
miRNA:   3'- -CGCuGCCAG-CGCGUagCGCAG---CGCGG- -5'
22944 3' -59.1 NC_005137.2 + 28187 0.67 0.733746
Target:  5'- gGCGACaGcGUCGCGUGuacaaacUCGaCGcagucguccUCGCGCCa -3'
miRNA:   3'- -CGCUG-C-CAGCGCGU-------AGC-GC---------AGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 18227 0.67 0.725154
Target:  5'- -aGGCGGUguugcugugUGCGCGUCGUucGUacugcgGCGCCg -3'
miRNA:   3'- cgCUGCCA---------GCGCGUAGCG--CAg-----CGCGG- -5'
22944 3' -59.1 NC_005137.2 + 50088 0.67 0.725154
Target:  5'- cGCGccuccACGGcCGCGCAaaugCGCGUgaGCGUg -3'
miRNA:   3'- -CGC-----UGCCaGCGCGUa---GCGCAg-CGCGg -5'
22944 3' -59.1 NC_005137.2 + 49679 0.67 0.725154
Target:  5'- cGCGACaauGG-CGCGCG--GCGguaacuaCGCGCCg -3'
miRNA:   3'- -CGCUG---CCaGCGCGUagCGCa------GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 56743 0.67 0.725154
Target:  5'- aGC-AC-GUCGCcCGUCGCGUCGgGUCc -3'
miRNA:   3'- -CGcUGcCAGCGcGUAGCGCAGCgCGG- -5'
22944 3' -59.1 NC_005137.2 + 110669 0.67 0.722277
Target:  5'- cGUGACGGgcgUGCGCGgagcccaucaaguaUCGgGUCauGCGCg -3'
miRNA:   3'- -CGCUGCCa--GCGCGU--------------AGCgCAG--CGCGg -5'
22944 3' -59.1 NC_005137.2 + 117681 0.68 0.705853
Target:  5'- -gGAUGGUaaucuaGCGUuUC-CGUUGCGCCa -3'
miRNA:   3'- cgCUGCCAg-----CGCGuAGcGCAGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 99516 0.68 0.696109
Target:  5'- uGCGGCuGGcCGCGCAaguuuucCGCGUuuaacUGCGUCa -3'
miRNA:   3'- -CGCUG-CCaGCGCGUa------GCGCA-----GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 129798 0.68 0.696109
Target:  5'- cGUGuCGGUCGaaaCGUAUugaCGCGUUGCGUa -3'
miRNA:   3'- -CGCuGCCAGC---GCGUA---GCGCAGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 57636 0.68 0.696109
Target:  5'- cGUGACGaaaCGCGCAaacgGCGUCGUgGCCu -3'
miRNA:   3'- -CGCUGCca-GCGCGUag--CGCAGCG-CGG- -5'
22944 3' -59.1 NC_005137.2 + 97969 0.68 0.693176
Target:  5'- cGCGucauuguaggcaaaACGGgCGCGCggCGUGggUGCGCCc -3'
miRNA:   3'- -CGC--------------UGCCaGCGCGuaGCGCa-GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 38530 0.68 0.67648
Target:  5'- gGCGAaaCGGUUGCGCAUauuuggUGCgGUCaaCGCCa -3'
miRNA:   3'- -CGCU--GCCAGCGCGUA------GCG-CAGc-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.