miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22944 3' -59.1 NC_005137.2 + 1846 0.66 0.798673
Target:  5'- aUGuCGGgacuaagauugCGCGCGUUGCugacCGCGCCg -3'
miRNA:   3'- cGCuGCCa----------GCGCGUAGCGca--GCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 7018 0.68 0.656714
Target:  5'- cGUGGCGcaCGCGCGUCacgGCcUCGuCGCCg -3'
miRNA:   3'- -CGCUGCcaGCGCGUAG---CGcAGC-GCGG- -5'
22944 3' -59.1 NC_005137.2 + 7179 0.69 0.607105
Target:  5'- gGCGACGaGgccgugaCGCGCGUgCGCcacGUUGUGCCc -3'
miRNA:   3'- -CGCUGC-Ca------GCGCGUA-GCG---CAGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 10712 0.74 0.355166
Target:  5'- uCGAUGGcgugcaccgcaUCGCGCA-CGCGUCG-GCCa -3'
miRNA:   3'- cGCUGCC-----------AGCGCGUaGCGCAGCgCGG- -5'
22944 3' -59.1 NC_005137.2 + 11208 0.66 0.789894
Target:  5'- uGCGuucGCGGUCGCGUAUacaGUuuuuucugCGCGCa -3'
miRNA:   3'- -CGC---UGCCAGCGCGUAg--CGca------GCGCGg -5'
22944 3' -59.1 NC_005137.2 + 13630 0.67 0.75352
Target:  5'- uGCGACuGUCGuUGUA-CGCGaUCGCGUUc -3'
miRNA:   3'- -CGCUGcCAGC-GCGUaGCGC-AGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 17322 0.71 0.491222
Target:  5'- uGCGACG--UGCGCGUCGCagauaaUgGCGCCa -3'
miRNA:   3'- -CGCUGCcaGCGCGUAGCGc-----AgCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 18227 0.67 0.725154
Target:  5'- -aGGCGGUguugcugugUGCGCGUCGUucGUacugcgGCGCCg -3'
miRNA:   3'- cgCUGCCA---------GCGCGUAGCG--CAg-----CGCGG- -5'
22944 3' -59.1 NC_005137.2 + 19989 0.68 0.656714
Target:  5'- gGCGGCGGagGCu--UUGUGUCGCGgCg -3'
miRNA:   3'- -CGCUGCCagCGcguAGCGCAGCGCgG- -5'
22944 3' -59.1 NC_005137.2 + 24592 0.71 0.491222
Target:  5'- cGUGACGGUguucaGCGUGUUGCauGUUGCGCg -3'
miRNA:   3'- -CGCUGCCAg----CGCGUAGCG--CAGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 27622 0.66 0.806453
Target:  5'- cUGGCGG-CGCaCGUCGCGacgucaaUUGCGCg -3'
miRNA:   3'- cGCUGCCaGCGcGUAGCGC-------AGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 28187 0.67 0.733746
Target:  5'- gGCGACaGcGUCGCGUGuacaaacUCGaCGcagucguccUCGCGCCa -3'
miRNA:   3'- -CGCUG-C-CAGCGCGU-------AGC-GC---------AGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 28228 0.71 0.490295
Target:  5'- cGCGcuGCGuguacagccGUCugGCGCAUcccagcgCGCGUCGCGCCa -3'
miRNA:   3'- -CGC--UGC---------CAG--CGCGUA-------GCGCAGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 31204 0.68 0.657705
Target:  5'- cGCGucgcccuuguaccaGCGGUCGCGgcacaccagcuugaaCAUggcCGCGUCGUGCg -3'
miRNA:   3'- -CGC--------------UGCCAGCGC---------------GUA---GCGCAGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 31627 0.67 0.762786
Target:  5'- gGCGgccaACGGUCaGUGCAcgCGCGcggaCGCGaCCa -3'
miRNA:   3'- -CGC----UGCCAG-CGCGUa-GCGCa---GCGC-GG- -5'
22944 3' -59.1 NC_005137.2 + 31690 0.68 0.65275
Target:  5'- cGCGugguuguGCGGUCGCaccgacguguGCAcguUCGCGUCGUuucgcgugcguauaGCCg -3'
miRNA:   3'- -CGC-------UGCCAGCG----------CGU---AGCGCAGCG--------------CGG- -5'
22944 3' -59.1 NC_005137.2 + 31798 0.71 0.481984
Target:  5'- aGCG-UGGUCGCGuCcgCGCG-CGUGCa -3'
miRNA:   3'- -CGCuGCCAGCGC-GuaGCGCaGCGCGg -5'
22944 3' -59.1 NC_005137.2 + 31963 0.71 0.509938
Target:  5'- cGCGGCauugGGcCGcCGCAUCGC--UGCGCCa -3'
miRNA:   3'- -CGCUG----CCaGC-GCGUAGCGcaGCGCGG- -5'
22944 3' -59.1 NC_005137.2 + 35033 0.77 0.241609
Target:  5'- aCGuACGGUacgcccaUGCGCAUCGCGUUGCccGCCg -3'
miRNA:   3'- cGC-UGCCA-------GCGCGUAGCGCAGCG--CGG- -5'
22944 3' -59.1 NC_005137.2 + 35560 0.71 0.509938
Target:  5'- aUGAUGGgcgCGCGCcgauUCcaaauGCGUCGCGUCa -3'
miRNA:   3'- cGCUGCCa--GCGCGu---AG-----CGCAGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.