miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22944 5' -50.5 NC_005137.2 + 34833 0.66 0.996444
Target:  5'- gGGACCCcacGGCGCuugcugGUGcggUGGCGGg -3'
miRNA:   3'- gCUUGGG---CUGCGcaaa--CACa--ACUGCC- -5'
22944 5' -50.5 NC_005137.2 + 98205 0.66 0.993466
Target:  5'- aGGuuGCCUGGCGCGUUUugcagcucaGUGUUuuCGGu -3'
miRNA:   3'- gCU--UGGGCUGCGCAAA---------CACAAcuGCC- -5'
22944 5' -50.5 NC_005137.2 + 42370 0.66 0.99318
Target:  5'- cCGAcaACCCGgaGCGCGUcaaGUGUUGcaaguugagcuucgGCGGu -3'
miRNA:   3'- -GCU--UGGGC--UGCGCAaa-CACAAC--------------UGCC- -5'
22944 5' -50.5 NC_005137.2 + 110801 0.67 0.992883
Target:  5'- aCGGGCacaagccaaacgccgUCGGCGCGUUUGUGc--ACGGc -3'
miRNA:   3'- -GCUUG---------------GGCUGCGCAAACACaacUGCC- -5'
22944 5' -50.5 NC_005137.2 + 110643 0.67 0.991362
Target:  5'- --cGCgCCGACgGCGUUuggcuUGUGcccgUGACGGg -3'
miRNA:   3'- gcuUG-GGCUG-CGCAA-----ACACa---ACUGCC- -5'
22944 5' -50.5 NC_005137.2 + 106582 0.68 0.98175
Target:  5'- uGGACauuuaCGGCGCcgcgGUGUUGACGa -3'
miRNA:   3'- gCUUGg----GCUGCGcaaaCACAACUGCc -5'
22944 5' -50.5 NC_005137.2 + 57720 0.69 0.97357
Target:  5'- uGGGCUCGACGCGUUcuaaacgcGGCGGg -3'
miRNA:   3'- gCUUGGGCUGCGCAAacacaa--CUGCC- -5'
22944 5' -50.5 NC_005137.2 + 99720 0.69 0.971888
Target:  5'- -aGAUCCaaaaAUGCGUagGUGUUGACGGu -3'
miRNA:   3'- gcUUGGGc---UGCGCAaaCACAACUGCC- -5'
22944 5' -50.5 NC_005137.2 + 50814 0.69 0.968916
Target:  5'- uCGAGCCCgguaGACGgGUUUGUGcgcgUGuuGGu -3'
miRNA:   3'- -GCUUGGG----CUGCgCAAACACa---ACugCC- -5'
22944 5' -50.5 NC_005137.2 + 56587 0.7 0.95867
Target:  5'- gGGACCCGACGCGacg--GgcGACGu -3'
miRNA:   3'- gCUUGGGCUGCGCaaacaCaaCUGCc -5'
22944 5' -50.5 NC_005137.2 + 100039 0.71 0.920214
Target:  5'- uGGuuaCCGAUGCGUcgGUGUacgaguuUGACGGa -3'
miRNA:   3'- gCUug-GGCUGCGCAaaCACA-------ACUGCC- -5'
22944 5' -50.5 NC_005137.2 + 109551 0.76 0.738571
Target:  5'- aCGAGCCCGACggugucaggcugcaGUGUgacgGUGgcGACGGg -3'
miRNA:   3'- -GCUUGGGCUG--------------CGCAaa--CACaaCUGCC- -5'
22944 5' -50.5 NC_005137.2 + 63678 1.13 0.006298
Target:  5'- cCGAACCCGACGCGUUUGUGUUGACGGg -3'
miRNA:   3'- -GCUUGGGCUGCGCAAACACAACUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.