Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22945 | 3' | -51.2 | NC_005137.2 | + | 96315 | 0.66 | 0.979198 |
Target: 5'- gCCGGCgCGCaAGUGuGGAcUGCCGAAAc-- -3' miRNA: 3'- -GGCUG-GUG-UCGC-CCU-ACGGUUUUauu -5' |
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22945 | 3' | -51.2 | NC_005137.2 | + | 108503 | 0.66 | 0.97674 |
Target: 5'- gUCGGCCAUGGCaaaauaagcaucGGGAgagGCCGAAu--- -3' miRNA: 3'- -GGCUGGUGUCG------------CCCUa--CGGUUUuauu -5' |
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22945 | 3' | -51.2 | NC_005137.2 | + | 56154 | 0.67 | 0.971196 |
Target: 5'- aCGugUAaucgAGCGGGGUGCCGu----- -3' miRNA: 3'- gGCugGUg---UCGCCCUACGGUuuuauu -5' |
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22945 | 3' | -51.2 | NC_005137.2 | + | 90720 | 0.67 | 0.968093 |
Target: 5'- aCGACUACGGCGccGUaacaaGCCAAAGUGAc -3' miRNA: 3'- gGCUGGUGUCGCccUA-----CGGUUUUAUU- -5' |
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22945 | 3' | -51.2 | NC_005137.2 | + | 59475 | 0.68 | 0.939605 |
Target: 5'- aCCGGCacgAUAGUacaGGGAUGCCGAAc--- -3' miRNA: 3'- -GGCUGg--UGUCG---CCCUACGGUUUuauu -5' |
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22945 | 3' | -51.2 | NC_005137.2 | + | 60629 | 0.71 | 0.861329 |
Target: 5'- aCCGACCgACAGCGGuGcacGCCGGAcgAGg -3' miRNA: 3'- -GGCUGG-UGUCGCC-Cua-CGGUUUuaUU- -5' |
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22945 | 3' | -51.2 | NC_005137.2 | + | 104684 | 0.72 | 0.82751 |
Target: 5'- -gGGCCGCGGCGuguGGGUGCCu-GGUAAg -3' miRNA: 3'- ggCUGGUGUCGC---CCUACGGuuUUAUU- -5' |
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22945 | 3' | -51.2 | NC_005137.2 | + | 69979 | 1.09 | 0.006547 |
Target: 5'- aCCGACCACAGCGGGAUGCCAAAAUAAu -3' miRNA: 3'- -GGCUGGUGUCGCCCUACGGUUUUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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