miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22945 3' -51.2 NC_005137.2 + 96315 0.66 0.979198
Target:  5'- gCCGGCgCGCaAGUGuGGAcUGCCGAAAc-- -3'
miRNA:   3'- -GGCUG-GUG-UCGC-CCU-ACGGUUUUauu -5'
22945 3' -51.2 NC_005137.2 + 108503 0.66 0.97674
Target:  5'- gUCGGCCAUGGCaaaauaagcaucGGGAgagGCCGAAu--- -3'
miRNA:   3'- -GGCUGGUGUCG------------CCCUa--CGGUUUuauu -5'
22945 3' -51.2 NC_005137.2 + 56154 0.67 0.971196
Target:  5'- aCGugUAaucgAGCGGGGUGCCGu----- -3'
miRNA:   3'- gGCugGUg---UCGCCCUACGGUuuuauu -5'
22945 3' -51.2 NC_005137.2 + 90720 0.67 0.968093
Target:  5'- aCGACUACGGCGccGUaacaaGCCAAAGUGAc -3'
miRNA:   3'- gGCUGGUGUCGCccUA-----CGGUUUUAUU- -5'
22945 3' -51.2 NC_005137.2 + 59475 0.68 0.939605
Target:  5'- aCCGGCacgAUAGUacaGGGAUGCCGAAc--- -3'
miRNA:   3'- -GGCUGg--UGUCG---CCCUACGGUUUuauu -5'
22945 3' -51.2 NC_005137.2 + 60629 0.71 0.861329
Target:  5'- aCCGACCgACAGCGGuGcacGCCGGAcgAGg -3'
miRNA:   3'- -GGCUGG-UGUCGCC-Cua-CGGUUUuaUU- -5'
22945 3' -51.2 NC_005137.2 + 104684 0.72 0.82751
Target:  5'- -gGGCCGCGGCGuguGGGUGCCu-GGUAAg -3'
miRNA:   3'- ggCUGGUGUCGC---CCUACGGuuUUAUU- -5'
22945 3' -51.2 NC_005137.2 + 69979 1.09 0.006547
Target:  5'- aCCGACCACAGCGGGAUGCCAAAAUAAu -3'
miRNA:   3'- -GGCUGGUGUCGCCCUACGGUUUUAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.