miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22945 5' -59.3 NC_005137.2 + 95801 0.66 0.711642
Target:  5'- -cUUGCCCGUCGGCG----CACGGCGc -3'
miRNA:   3'- auAGUGGGCGGCCGUuaggGUGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 38247 0.66 0.711642
Target:  5'- cGUUGCCCGUgGGCuugUCCGUGGCGg -3'
miRNA:   3'- aUAGUGGGCGgCCGuuaGGGUGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 38080 0.66 0.691606
Target:  5'- gUGUCACugaCCGCCacGGaCAAgCCCACgGGCAa -3'
miRNA:   3'- -AUAGUG---GGCGG--CC-GUUaGGGUG-CCGU- -5'
22945 5' -59.3 NC_005137.2 + 19427 0.66 0.68151
Target:  5'- cAUCGCCagaGCaCGGCAa---CACGGCAa -3'
miRNA:   3'- aUAGUGGg--CG-GCCGUuaggGUGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 130552 0.67 0.671373
Target:  5'- aUGUCACCgcgaaggucCGaaGGCGGUUCCACGGg- -3'
miRNA:   3'- -AUAGUGG---------GCggCCGUUAGGGUGCCgu -5'
22945 5' -59.3 NC_005137.2 + 72133 0.67 0.671373
Target:  5'- -uUCGCCUaacgcuGCCGGCAcgUCCAacgacgUGGCAa -3'
miRNA:   3'- auAGUGGG------CGGCCGUuaGGGU------GCCGU- -5'
22945 5' -59.3 NC_005137.2 + 128610 0.67 0.644889
Target:  5'- --cUugCCGCCGGUuaauAGUuuguagguuagcacgCCCACGGCGu -3'
miRNA:   3'- auaGugGGCGGCCG----UUA---------------GGGUGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 106367 0.67 0.620378
Target:  5'- -uUUGCCCGUucuUGGCGaccgcGUCCCACGuGCGg -3'
miRNA:   3'- auAGUGGGCG---GCCGU-----UAGGGUGC-CGU- -5'
22945 5' -59.3 NC_005137.2 + 63794 0.68 0.610174
Target:  5'- gGUCGCgCGcCCGGUcucuAUCCCAUGGaCGa -3'
miRNA:   3'- aUAGUGgGC-GGCCGu---UAGGGUGCC-GU- -5'
22945 5' -59.3 NC_005137.2 + 117734 0.68 0.569594
Target:  5'- cGUCGCCCGUCaGCcgcaCCgGCGGCGc -3'
miRNA:   3'- aUAGUGGGCGGcCGuua-GGgUGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 96416 0.68 0.559542
Target:  5'- --cUACCCGCgCGGCGAcgcgCCCGCcGCGu -3'
miRNA:   3'- auaGUGGGCG-GCCGUUa---GGGUGcCGU- -5'
22945 5' -59.3 NC_005137.2 + 43945 0.69 0.529711
Target:  5'- cGUCGCUgaaaGUCGGCAAaCCCGCuGGCGc -3'
miRNA:   3'- aUAGUGGg---CGGCCGUUaGGGUG-CCGU- -5'
22945 5' -59.3 NC_005137.2 + 35008 0.7 0.481397
Target:  5'- cGUUGCCCGCCGuGCGguaccAUCCCaucgaggugACGGCc -3'
miRNA:   3'- aUAGUGGGCGGC-CGU-----UAGGG---------UGCCGu -5'
22945 5' -59.3 NC_005137.2 + 47614 0.7 0.444337
Target:  5'- ---aGCCaCGCCuGCAAUUCUACGGCGu -3'
miRNA:   3'- auagUGG-GCGGcCGUUAGGGUGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 18745 0.71 0.408933
Target:  5'- gGUCACgCUGCgGGCAAUCUCgcaauugaaACGGCGc -3'
miRNA:   3'- aUAGUG-GGCGgCCGUUAGGG---------UGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 88166 0.73 0.336054
Target:  5'- gGUgGCCgCGCCGGCAAUCCCAUu--- -3'
miRNA:   3'- aUAgUGG-GCGGCCGUUAGGGUGccgu -5'
22945 5' -59.3 NC_005137.2 + 56739 0.74 0.27962
Target:  5'- cGUCGCCCGUCGcGUcgGGUCCCauaACGGCGc -3'
miRNA:   3'- aUAGUGGGCGGC-CG--UUAGGG---UGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 119718 0.76 0.219998
Target:  5'- --gCAuCCCGCCGcGCAGcgCCCAUGGCAa -3'
miRNA:   3'- auaGU-GGGCGGC-CGUUa-GGGUGCCGU- -5'
22945 5' -59.3 NC_005137.2 + 70013 1.06 0.001676
Target:  5'- gUAUCACCCGCCGGCAAUCCCACGGCAc -3'
miRNA:   3'- -AUAGUGGGCGGCCGUUAGGGUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.